View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291-Insertion-4 (Length: 745)

Name: NF5291-Insertion-4
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291-Insertion-4
NF5291-Insertion-4
[»] chr8 (1 HSPs)
chr8 (8-745)||(9338250-9338987)
[»] chr4 (5 HSPs)
chr4 (466-715)||(31837998-31838246)
chr4 (466-715)||(13041540-13041789)
chr4 (270-360)||(36265456-36265547)
chr4 (271-360)||(31837813-31837903)
chr4 (270-330)||(13037244-13037305)
[»] chr2 (2 HSPs)
chr2 (466-715)||(17726868-17727116)
chr2 (270-360)||(17722596-17722687)
[»] chr5 (2 HSPs)
chr5 (466-715)||(30591666-30591920)
chr5 (270-330)||(30591480-30591541)
[»] chr6 (1 HSPs)
chr6 (278-330)||(24819001-24819053)
[»] chr3 (2 HSPs)
chr3 (270-396)||(7707277-7707400)
chr3 (38-97)||(54083069-54083128)


Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 8 - 745
Target Start/End: Complemental strand, 9338987 - 9338250
Alignment:
Q  8 tcttattggtaacaaaacttatttactctcttcctttaaatcaggttaatttacatgtgaagcacaacaatgtaagaagcctagcccattatagaagtag 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9338987 tcttattggtaacaaaacttatttactcttttcctttaaatcaggttcgtttacatgtgaagcacaacaatgtaagaagcctagcccattatagaagtag 9338888  T
Q  108 atttccttctcttttgtaaatacatcatgcttgcaaaggggagataggagacatagtaataaacagataattgagttaccgaaatgagttgaggttttgg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  9338887 atttccttctcttttgtaaatacatcatgcttgcaaaggggagataggagacatagtaataaacagataattgtgttaccgaaatgagttgaggtttcgg 9338788  T
Q  208 agcatannnnnnngcagatagaagcatgtttctaaatgtcgcgaagagtcgagacttcagataacaaggtttttggtgctgaattgcttaagggattagc 307  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9338787 agcatatttttttgcagatagaagcatgtttctaaatgtcgcgaagagtcgagacttcagataacaaggtttttggtgctgaattgcgtaagggattagc 9338688  T
Q  308 tctcaccattttgtatttataatgggaatatgcaaaaaataaattacatgatctagctagagagtaaatcttgcttaattacataagaggtgtgcacaag 407  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  9338687 tctcagcattttgtatttataatgagaatatgcaaaaaataaattacatgatctagctagagagtaaatcttgcttaattacataagaggtgtatacaag 9338588  T
Q  408 g--nnnnnnnnggaaaatttacat-aataagagagttaatatctcaaatcaataatattatttattacgcatatctcaacactccctgtctaactgcaat 504  Q
    |          ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||     
T  9338587 gaaaaaaaaaaggaaaatttacataaataagagagttaatatctcaaatcagtaatattatttattacgcatatctcaacactccctggctaactgcaac 9338488  T
Q  505 gtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagagacatcgtgaagatatgtgttgattgatcaataaaaccaaca 604  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||    
T  9338487 gtacaaataagatgcatcaagtttgtcacatatgcaagtgatcattggtacttgaagagacattgtgaagatatgtgttgattgatcattaaaaccaaca 9338388  T
Q  605 aaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcgatctcaatatgcttagtttgctcgagtaagactagaattaaaggca 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  9338387 aaagaaatgccaatttcaccatacataatcttctcacaaataaaatgacgatcgatctcaatatgcttagtttgctcgagaaagactag-attaaaggca 9338289  T
Q  705 atgtgtagggcatctttggtttgtctcaaaggaaactcata 745  Q
    ||||||||||||||||  | |||||||||| || |||||||    
T  9338288 atgtgtagggcatctt--ggttgtctcaaacgatactcata 9338250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 7e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 466 - 715
Target Start/End: Original strand, 31837998 - 31838246
Alignment:
Q  466 ttattacgcatatctcaacactccctgtctaactgcaatgtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagagac 565  Q
    |||||||||||||||||||||||||  || | ||| |   ||||||| | |||||||||| ||||||||| ||||||||||| ||| |||||||||||||    
T  31837998 ttattacgcatatctcaacactccccctcaagctggagcatacaaatcatatgcatcaagcttgtcacatatgtaagtgatccttgatcctcgaagagac 31838097  T
Q  566 atcgtgaagatatgtgttgattgatcaataaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcgatctcaa 665  Q
     ||||||||||||  | |  ||||||| || |||||||||||||| |  ||||||||||| ||||||| ||||||| ||||||||| |  ||||||||||    
T  31838098 ttcgtgaagatatcggctagttgatcattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcgatctcaa 31838197  T
Q  666 tatgcttagtttgctcgagtaagactagaattaaaggcaatgtgtagggc 715  Q
    ||||||||||||||||  | |||||| | |||| ||||||||||||||||    
T  31838198 tatgcttagtttgctcatgaaagact-ggattagaggcaatgtgtagggc 31838246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 466 - 715
Target Start/End: Complemental strand, 13041789 - 13041540
Alignment:
Q  466 ttattacgcatatctcaacactccctgtctaactgcaatgtacaaa-taagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagaga 564  Q
    |||||||||||||||||||||||||  || | ||| |   |||||| | | |||||||||| ||||||||| ||||||||||| ||||||||||||||||    
T  13041789 ttattacgcatatctcaacactccccctcaagctggagcatacaaaatcatatgcatcaagcttgtcacatatgtaagtgatccttggtcctcgaagaga 13041690  T
Q  565 catcgtgaagatatgtgttgattgatcaataaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcgatctca 664  Q
    | ||||||||||||  | |  ||||||| || |||||||||||||| |  ||||||||||| ||||||| ||||||| ||||||||| |  |||||||||    
T  13041689 cttcgtgaagatatcggctagttgatcattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcgatctca 13041590  T
Q  665 atatgcttagtttgctcgagtaagactagaattaaaggcaatgtgtagggc 715  Q
    |||||||||||| ||||  | |||||| | |||| ||||||||||||||||    
T  13041589 atatgcttagttcgctcatgaaagact-ggattagaggcaatgtgtagggc 13041540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 36265547 - 36265456
Alignment:
Q  270 aacaaggtttt-tggtgctgaattgcttaagggattagctctcaccattttgtatttataatgggaatatgcaaaaaataaattacatgatc 360  Q
    ||||||||||| |||||||||||  ||| || |||||||||||| | |||||||||||||||  ||||||| | ||| |||||  |||||||    
T  36265547 aacaaggttttctggtgctgaataacttgagagattagctctcagccttttgtatttataataagaatatgtacaaagtaaatcccatgatc 36265456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 360
Target Start/End: Original strand, 31837813 - 31837903
Alignment:
Q  271 acaaggtttt-tggtgctgaattgcttaagggattagctctcaccattttgtatttataatgggaatatgcaaaaaataaattacatgatc 360  Q
    |||||||||| |||||||||||  ||| || |||||||||||| | |||||||||||||||  ||||||| | ||| |||||  |||||||    
T  31837813 acaaggttttctggtgctgaataacttgagagattagctctcagccttttgtatttataataagaatatgtacaaagtaaatcccatgatc 31837903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 13037305 - 13037244
Alignment:
Q  270 aacaaggtttt-tggtgctgaattgcttaagggattagctctcaccattttgtatttataat 330  Q
    ||||||||||| |||||||||||  ||| || |||||||||||| | |||||||||||||||    
T  13037305 aacaaggttttctggtgctgaataacttgagagattagctctcagccttttgtatttataat 13037244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 7e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 466 - 715
Target Start/End: Complemental strand, 17727116 - 17726868
Alignment:
Q  466 ttattacgcatatctcaacactccctgtctaactgcaatgtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagagac 565  Q
    |||||||||||||||||||||||||  || | ||| |   ||||||| | |||||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  17727116 ttattacgcatatctcaacactccccctcaagctggagcatacaaatcatatgcatcaagcttgtcacatatgtaagtgatccttggtcctcgaagagac 17727017  T
Q  566 atcgtgaagatatgtgttgattgatcaataaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcgatctcaa 665  Q
     ||||||||||||  | |  ||||||| || |||||||||||||| |  ||||||||||| ||||||| ||||||| ||||||||| |  ||||||||||    
T  17727016 ttcgtgaagatatcggctagttgatcattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcgatctcaa 17726917  T
Q  666 tatgcttagtttgctcgagtaagactagaattaaaggcaatgtgtagggc 715  Q
    ||||||||||| ||||  | |||||| | |||| ||||||||||||||||    
T  17726916 tatgcttagttcgctcatgaaagact-ggattagaggcaatgtgtagggc 17726868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 17722687 - 17722596
Alignment:
Q  270 aacaaggtttt-tggtgctgaattgcttaagggattagctctcaccattttgtatttataatgggaatatgcaaaaaataaattacatgatc 360  Q
    ||||||||||| |||||||||||  ||| || |||||||||||| | |||||||||||||||  ||||||| | ||| |||||  |||||||    
T  17722687 aacaaggttttctggtgctgaataacttgagagattagctctcagccttttgtatttataataagaatatgtacaaagtaaatcccatgatc 17722596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 466 - 715
Target Start/End: Original strand, 30591666 - 30591920
Alignment:
Q  466 ttattacgcatatctcaacactccctgtctaactgcaatgtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagagac 565  Q
    |||||||||||||||||||||||||  || | ||| |   ||||||| | |||||||||| ||||||||| || |||||||| |||||||||||||||||    
T  30591666 ttattacgcatatctcaacactccccttcaagctggagcatacaaatcatatgcatcaagcttgtcacatatgcaagtgatccttggtcctcgaagagac 30591765  T
Q  566 atcgtgaagatatgtgttgattgatcaataa------aaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcga 659  Q
     | ||||||||||  | |  ||||||| ||       |||||||||||||| |  ||||||||||| ||||||| ||||||| ||||||||| |  ||||    
T  30591766 tttgtgaagatatcggctagttgatcattactattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcga 30591865  T
Q  660 tctcaatatgcttagtttgctcgagtaagactagaattaaaggcaatgtgtagggc 715  Q
    ||||||||||||||||| ||||  | |||||| | |||| ||||||||||||||||    
T  30591866 tctcaatatgcttagttcgctcatgaaagact-ggattagaggcaatgtgtagggc 30591920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 30591480 - 30591541
Alignment:
Q  270 aacaaggtttt-tggtgctgaattgcttaagggattagctctcaccattttgtatttataat 330  Q
    ||||||||||| |||||||||||  |||||| |||||||||||| | |||||||||||||||    
T  30591480 aacaaggttttctggtgctgaataacttaagagattagctctcaaccttttgtatttataat 30591541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 24819053 - 24819001
Alignment:
Q  278 ttttggtgctgaattgcttaagggattagctctcaccattttgtatttataat 330  Q
    ||||||||||||||| ||| |||||||||||| || |||||| ||||||||||    
T  24819053 ttttggtgctgaatttcttgagggattagctcccagcattttctatttataat 24819001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 396
Target Start/End: Original strand, 7707277 - 7707400
Alignment:
Q  270 aacaaggtttttggtgctgaattgcttaagggattagctctcaccattttgtatttataatgggaatatgcaaaaaataaattacatgatctagctagag 369  Q
    ||||||||||||||||||||||  ||| || ||||||| ||||   |||||||||||||||  ||||||| | ||| |||||  |||||||    ||| |    
T  7707277 aacaaggtttttggtgctgaataacttgagagattagccctcagacttttgtatttataataagaatatgtacaaagtaaatcccatgatc---ataggg 7707373  T
Q  370 agtaaatcttgcttaattacataagag 396  Q
    ||||||||  || ||||||||||||||    
T  7707374 agtaaatcaggcctaattacataagag 7707400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 54083128 - 54083069
Alignment:
Q  38 ttcctttaaatcaggttaatttacatgtgaagcacaacaatgtaagaagcctagcccatt 97  Q
    |||||| | ||||||||  ||||||||||||||||| | ||| |||||||||||||||||    
T  54083128 ttccttaatatcaggttggtttacatgtgaagcacagctatgcaagaagcctagcccatt 54083069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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