View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5291-Insertion-5 (Length: 617)
Name: NF5291-Insertion-5
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-5 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 290 - 617
Target Start/End: Complemental strand, 40166132 - 40165805
Alignment:
| Q |
290 |
cttactaatgtgataaaacatgttgtagagcaattaaacatgttgtgacagtggtggcctccgatccaaaacaaaacattttcgtacacgacactcacct |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40166132 |
cttactaatgtgataaaacatgttgtagagcaattaaacatgttgtgacagtggtggcctccgatccaaaacaaaacattttcgtacacgacactcacct |
40166033 |
T |
|
| Q |
390 |
tgatacagcagcagatggtcgatcgggatgtgtaacttacaagaacacaatagatctaaagttaaagacaactctttgnnnnnnnnnnnnnnnnnncaca |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40166032 |
tgatacagcagcagatggtcgatcgggatgtgtaacttacaagaacacaatagatctaaagttaaagacaactctttgtttttttaatttatttttcaca |
40165933 |
T |
|
| Q |
490 |
ccgtataatattgcaacttttctgatattcttgcgttttaattcactatttgacacaatggtgaggaaacttagaacacattttttccggaaaaggagga |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40165932 |
ccgtataatattgcaacttttctgatattcttgcgttttaattcactatttgacaaaatggtgaggaaacttggaacacattttttccggaaaaggagga |
40165833 |
T |
|
| Q |
590 |
ggaaaattgctcatcaacgttgccttta |
617 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
40165832 |
ggaaaattgctcatcaacgttgccttta |
40165805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 40166421 - 40166185
Alignment:
| Q |
8 |
gtttcaacaagaatggagatggtctaacccgacttgacattattgaagttgagatgtgataaaccactcaatgatattgtaagagtaatacaaacttatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40166421 |
gtttcaacaagaatggagatggtctaacccgacttgacattattgaagttgagatgtgataaaccactcaatgatattgtaagagtaatacaaacttatg |
40166322 |
T |
|
| Q |
108 |
ctcgaagactatacatcttaaagaattttgaacaaccttaattatt------------aatgaaatgtacaactttcaataaaatgtttttatctttagt |
195 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40166321 |
ctcgaagac--tacatcttaaagaattttgaacaaccttaattattttttggatggaaaatgaaatgtacaactttcaataaaatgtttttatctttagt |
40166224 |
T |
|
| Q |
196 |
agacgtataaatatccgatgacacgtgttaacattttac |
234 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40166223 |
agacgtataaatatccgaggacacgtgttaacattttac |
40166185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4237 times since January 2019
Visitors: 8757