View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-7 (Length: 300)
Name: NF5291-Insertion-7
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 47354995 - 47355200
Alignment:
| Q |
7 |
agatgttactaatatgtactgccacatctaccaccctgcctataaagtaccaagcttattgtttcaattttctaagtcaaaatctcatttacaagcatgg |
106 |
Q |
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| T |
47354995 |
agatgttactaatatgtactgccacatctaccaccctgcctataaagtaccaagcttattgtttcaattttctaagtcaaaatctcatttacaagcatgg |
47355094 |
T |
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| Q |
107 |
caaatcaaagagttttcactctctcacagatctccaaccacaagtccaacaaagactgtttgcttgtgatcaacggcagagtaagtaaattaatccgttc |
206 |
Q |
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| T |
47355095 |
caaatcaaagagttttcactctctcacagatctccaaccacaagtccaacaaagactgtttgcttgtgatcaacggcagagtaagtaaattaatccgttc |
47355194 |
T |
|
| Q |
207 |
actact |
212 |
Q |
| |
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| |||| |
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| T |
47355195 |
attact |
47355200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 47355232 - 47355301
Alignment:
| Q |
222 |
tatctaaaataaagtatctcaataatatcataaacatattttagaagggtcttgaaaattgcttaatttt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47355232 |
tatctaaaataaagtatctcaataatatcataaacatattttagaagggtcttgaaaattgcttaatttt |
47355301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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