View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291-Insertion-8 (Length: 151)

Name: NF5291-Insertion-8
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291-Insertion-8
NF5291-Insertion-8
[»] chr4 (7 HSPs)
chr4 (7-151)||(31020728-31020872)
chr4 (7-151)||(31030609-31030753)
chr4 (14-111)||(31496075-31496172)
chr4 (7-48)||(31488783-31488824)
chr4 (11-109)||(31501241-31501345)
chr4 (7-121)||(31476122-31476239)
chr4 (8-48)||(31151232-31151272)
[»] scaffold1749 (1 HSPs)
scaffold1749 (7-114)||(1003-1104)
[»] scaffold0428 (1 HSPs)
scaffold0428 (7-114)||(9764-9865)
[»] chr6 (8 HSPs)
chr6 (7-48)||(33265739-33265780)
chr6 (7-48)||(33274883-33274924)
chr6 (11-48)||(33412779-33412816)
chr6 (11-45)||(33307347-33307381)
chr6 (7-44)||(33060412-33060449)
chr6 (80-113)||(33403535-33403568)
chr6 (11-48)||(33641799-33641836)
chr6 (11-47)||(33390934-33390970)
[»] chr2 (1 HSPs)
chr2 (7-44)||(17437875-17437912)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 2e-62; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 31020728 - 31020872
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31020728 agtatcttcgcctctaaaggtgacaaacacatcataataattcttcctccttggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 31020827  T
Q  107 tgaatatggtaaattgattatgaatactgagttcctatgaaatta 151  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  31020828 tgaatatgctaagttgattatgaatactgagttcctatgaaatta 31020872  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 31030609 - 31030753
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31030609 agtatcttcgcctctaaaggtgacaaacacatcataataattcttcctccttggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 31030708  T
Q  107 tgaatatggtaaattgattatgaatactgagttcctatgaaatta 151  Q
    |||||||| |||||||||||||||| |||||||||||||||||||    
T  31030709 tgaatatgctaaattgattatgaatgctgagttcctatgaaatta 31030753  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 31496172 - 31496075
Alignment:
Q  14 tcacctctgaaggtgacaaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatctgaat 111  Q
    |||||||| |||||||||||||||||||||| |||  |||||| |||| ||| ||  ||||||||||||| |||||||||||||||||||||||||||    
T  31496172 tcacctctaaaggtgacaaacacgtcataatgattgctcctccttggcgatgtcactagagctgaagaagtggagttgctgctgctagccatctgaat 31496075  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 31488824 - 31488783
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataatt 48  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31488824 agtatcttcacctctgaaggtgacaaacacgtcataataatt 31488783  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 31501345 - 31501241
Alignment:
Q  11 tcttcacctctgaaggtgacaaacacgtcataataattcttcctccctggcaatgccata------agagctgaagaagaggagttgctgctgctagcca 104  Q
    ||||||||||| || ||||||||| | ||||||||||||||||||| ||||| || || |      ||||| ||||||||||||||| ||||||||||||    
T  31501345 tcttcacctctaaaagtgacaaacgcatcataataattcttcctccttggcagtgtcacagtcacaagagccgaagaagaggagttgttgctgctagcca 31501246  T
Q  105 tctga 109  Q
    |||||    
T  31501245 tctga 31501241  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 31476239 - 31476122
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataattc---ttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagcc 103  Q
    ||||||||||||||||||| | ||||||||||||||| | |||   ||| |   |||||||| ||  |||||| ||||||||| |||| |||||||||||    
T  31476239 agtatcttcacctctgaagctcacaaacacgtcataaaagttctttttcttttttggcaatgtcaccagagctaaagaagaggggttgttgctgctagcc 31476140  T
Q  104 atctgaatatggtaaatt 121  Q
    || |||||| | ||||||    
T  31476139 atatgaataagataaatt 31476122  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 31151232 - 31151272
Alignment:
Q  8 gtatcttcacctctgaaggtgacaaacacgtcataataatt 48  Q
    ||||||| |||||| ||| ||||||||||||||||||||||    
T  31151232 gtatctttacctctaaagctgacaaacacgtcataataatt 31151272  T

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Target: scaffold1749 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 1003 - 1104
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    ||||||||||||||||||||||||||||||||||||| ||   || |||| |||||| | ||  |||||    | ||| |||||||||||||||||||||    
T  1003 agtatcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagc---cgtagacgagttgctgctgctagccatc 1096  T
Q  107 tgaatatg 114  Q
    ||||||||    
T  1097 tgaatatg 1104  T

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Target: scaffold0428 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 9764 - 9865
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    ||||||||||||||||||||||||||||||||||||| ||   || |||| |||||| | ||  |||||    | ||| |||||||||||||||||||||    
T  9764 agtatcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagc---cgtagacgagttgctgctgctagccatc 9857  T
Q  107 tgaatatg 114  Q
    ||||||||    
T  9858 tgaatatg 9865  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 33265739 - 33265780
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataatt 48  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  33265739 agtatcttcacctctgaaggtgacaaatacatcataataatt 33265780  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 33274883 - 33274924
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataataatt 48  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  33274883 agtatcttcacctctgaaggtgacaaatacatcataataatt 33274924  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 33412779 - 33412816
Alignment:
Q  11 tcttcacctctgaaggtgacaaacacgtcataataatt 48  Q
    |||||||||||||||||||||||||| |||||||||||    
T  33412779 tcttcacctctgaaggtgacaaacacatcataataatt 33412816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 33307347 - 33307381
Alignment:
Q  11 tcttcacctctgaaggtgacaaacacgtcataata 45  Q
    |||||||||||||||||||||||||| ||||||||    
T  33307347 tcttcacctctgaaggtgacaaacacatcataata 33307381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 33060412 - 33060449
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataat 44  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  33060412 agtatcttcacctctaaaggtgacaaacacatcataat 33060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 33403535 - 33403568
Alignment:
Q  80 gaagaggagttgctgctgctagccatctgaatat 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  33403535 gaagacgagttgctgctgctagccatctgaatat 33403568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 33641836 - 33641799
Alignment:
Q  11 tcttcacctctgaaggtgacaaacacgtcataataatt 48  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  33641836 tcttcacctctgtaggtgacaaacacatcataataatt 33641799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 33390934 - 33390970
Alignment:
Q  11 tcttcacctctgaaggtgacaaacacgtcataataat 47  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  33390934 tcttcacctcggaaggtgacaaacacatcataataat 33390970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 17437912 - 17437875
Alignment:
Q  7 agtatcttcacctctgaaggtgacaaacacgtcataat 44  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  17437912 agtatcttcacctctaaaggtgacaaacacatcataat 17437875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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