View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291_high_4 (Length: 321)
Name: NF5291_high_4
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291_high_4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 3669533 - 3669234
Alignment:
| Q |
22 |
ttctcgaagccctttatttgccaaccaatgattattcatctcatagaaatttatatatttatgacaatagaggtatatatgactatatgttatgtaagaa |
121 |
Q |
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| T |
3669533 |
ttctcgaagccctttatttgcaaaccaatgattattcatctcatagaaatttatatttttatgacaataaaggtatat--gactatatattatgtaagaa |
3669436 |
T |
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| Q |
122 |
aatattaaattaaaatttaatgaaaatcacatgaataatccaaaatgcaagtgttaagaatcttgaaacaccaagagcaaatacataatatcctgtgaat |
221 |
Q |
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| T |
3669435 |
aatattaaattaaaatttaatgaaactcacatgaataatccaaaatgcaagtgtgaagaatcttgaaacaccaagagcaaatacataatatcctgtgaat |
3669336 |
T |
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| Q |
222 |
gtttcaaccatctaaaaacatgtgcgagaattacaatattatccttattaagacataagcaaattata--tatagtagaacaaagggtagaggtttcaaa |
319 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3669335 |
gtttcaaccatctgaaaacatgtgctagaattacaatattatccttattaagacataagcaaattatatatatagtagaacaaagggtagaggtttcaaa |
3669236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 3663084 - 3662970
Alignment:
| Q |
150 |
acatgaataatccaaaatgcaagtgttaagaatcttgaaacaccaagagcaaatacataatatcctgtgaatgtttcaaccatctaaaaacatgtgcgag |
249 |
Q |
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||||||||||||||||| || | || | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |
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| T |
3663084 |
acatgaataatccaaaaagccaatgagagaaatcttgagacaccaagagcaaatacataatatcctgtgaatgtttcaacgatctgaaaacatgttttag |
3662985 |
T |
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| Q |
250 |
aattacaatattatc |
264 |
Q |
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| T |
3662984 |
aattacaatattatc |
3662970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 3685961 - 3685870
Alignment:
| Q |
148 |
tcacatgaataatccaaaatgcaagtgttaagaatcttgaaacaccaagagcaaatacataatatcctgtgaatgtttcaaccatctaaaaa |
239 |
Q |
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||||||||||||||||| | || |||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
3685961 |
tcacatgaataatccaataagccagtgaaaaaaatcttgaaacaccaagagcaaatacataataacctgtgaatgtttcaaccatctgaaaa |
3685870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 3678424 - 3678333
Alignment:
| Q |
148 |
tcacatgaataatccaaaatgcaagtgttaagaatcttgaaacaccaagagcaaatacataatatcctgtgaatgtttcaaccatctaaaaa |
239 |
Q |
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||||||||||||||||| | || | || || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
3678424 |
tcacatgaataatccaataagccaatgatacaaatcttgagacaccaagagcaaatacataatatcctgtaaatgtttcaaccatctgaaaa |
3678333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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