View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291_low_1 (Length: 819)

Name: NF5291_low_1
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291_low_1
NF5291_low_1
[»] chr4 (21 HSPs)
chr4 (1-266)||(39292503-39292771)
chr4 (679-804)||(39292080-39292209)
chr4 (166-239)||(39235421-39235494)
chr4 (164-227)||(39047759-39047822)
chr4 (166-239)||(39053763-39053836)
chr4 (514-575)||(36203229-36203290)
chr4 (392-436)||(37175798-37175842)
chr4 (392-436)||(39292309-39292353)
chr4 (524-575)||(20096287-20096338)
chr4 (524-574)||(13121538-13121588)
chr4 (519-577)||(13276120-13276178)
chr4 (525-563)||(18541506-18541544)
chr4 (524-574)||(18635524-18635574)
chr4 (529-575)||(22164291-22164337)
chr4 (529-575)||(29737666-29737712)
chr4 (532-574)||(33024150-33024192)
chr4 (529-575)||(43722758-43722804)
chr4 (520-577)||(8494978-8495035)
chr4 (512-577)||(11286786-11286851)
chr4 (524-569)||(38374956-38375001)
chr4 (520-577)||(38812862-38812919)
[»] chr7 (15 HSPs)
chr7 (166-239)||(7562764-7562837)
chr7 (512-575)||(964746-964809)
chr7 (519-570)||(1285081-1285132)
chr7 (512-577)||(3584195-3584260)
chr7 (529-578)||(22267571-22267620)
chr7 (390-435)||(24934749-24934794)
chr7 (523-571)||(3948051-3948099)
chr7 (524-576)||(35222916-35222968)
chr7 (519-575)||(42829246-42829302)
chr7 (534-577)||(20762831-20762874)
chr7 (524-575)||(30857241-30857292)
chr7 (513-575)||(1399155-1399217)
chr7 (521-555)||(28479870-28479904)
chr7 (513-574)||(5352323-5352384)
chr7 (518-555)||(37307885-37307922)
[»] chr1 (21 HSPs)
chr1 (529-576)||(22388197-22388244)
chr1 (529-576)||(41573291-41573338)
chr1 (517-576)||(43840335-43840394)
chr1 (525-575)||(41998344-41998394)
chr1 (521-574)||(2884462-2884515)
chr1 (525-577)||(18091194-18091247)
chr1 (513-574)||(27853349-27853410)
chr1 (524-573)||(44220982-44221031)
chr1 (512-568)||(49868011-49868067)
chr1 (512-575)||(7732415-7732478)
chr1 (524-575)||(16033467-16033518)
chr1 (529-576)||(29701342-29701389)
chr1 (524-571)||(41974758-41974805)
chr1 (529-575)||(30678835-30678881)
chr1 (518-576)||(41032923-41032981)
chr1 (524-574)||(44641521-44641571)
chr1 (529-570)||(9116894-9116935)
chr1 (512-577)||(11014223-11014288)
chr1 (512-573)||(23772282-23772343)
chr1 (512-545)||(27687617-27687650)
chr1 (519-576)||(41973247-41973304)
[»] chr2 (23 HSPs)
chr2 (519-577)||(11931596-11931654)
chr2 (524-575)||(29896311-29896362)
chr2 (521-571)||(1238159-1238209)
chr2 (524-577)||(3197096-3197149)
chr2 (529-566)||(3904204-3904241)
chr2 (529-577)||(28277698-28277746)
chr2 (521-577)||(45032684-45032740)
chr2 (530-577)||(6238587-6238634)
chr2 (512-555)||(7262819-7262862)
chr2 (524-575)||(27244650-27244701)
chr2 (524-571)||(34364512-34364559)
chr2 (512-555)||(37830726-37830769)
chr2 (524-574)||(6723094-6723144)
chr2 (519-573)||(7537105-7537159)
chr2 (519-577)||(9517021-9517079)
chr2 (388-422)||(17897868-17897902)
chr2 (528-574)||(43356654-43356700)
chr2 (525-570)||(13922650-13922695)
chr2 (512-549)||(30045472-30045509)
chr2 (512-549)||(30050635-30050672)
chr2 (512-549)||(30141679-30141716)
chr2 (521-570)||(30929059-30929108)
chr2 (388-425)||(39955494-39955531)
[»] chr8 (15 HSPs)
chr8 (524-577)||(7553670-7553723)
chr8 (388-435)||(3036534-3036581)
chr8 (512-555)||(24696011-24696054)
chr8 (519-577)||(26886054-26886112)
chr8 (519-575)||(8837913-8837969)
chr8 (524-575)||(6109162-6109213)
chr8 (519-574)||(6447183-6447238)
chr8 (517-576)||(13575281-13575340)
chr8 (524-571)||(33482166-33482213)
chr8 (521-575)||(8687859-8687913)
chr8 (525-574)||(8982561-8982610)
chr8 (512-569)||(10601762-10601819)
chr8 (524-577)||(14303156-14303209)
chr8 (529-574)||(32223901-32223946)
chr8 (524-577)||(33620889-33620942)
[»] chr6 (11 HSPs)
chr6 (512-555)||(2692228-2692271)
chr6 (530-574)||(7927694-7927738)
chr6 (388-436)||(28478663-28478711)
chr6 (388-436)||(29791118-29791166)
chr6 (524-575)||(12412270-12412321)
chr6 (512-574)||(8809300-8809362)
chr6 (528-574)||(12336347-12336393)
chr6 (532-574)||(21884981-21885023)
chr6 (522-575)||(2445292-2445345)
chr6 (522-575)||(3373396-3373449)
chr6 (512-577)||(31971520-31971585)
[»] chr5 (11 HSPs)
chr5 (524-575)||(40445976-40446027)
chr5 (512-577)||(1082224-1082289)
chr5 (519-579)||(8545001-8545061)
chr5 (529-577)||(10531531-10531579)
chr5 (517-571)||(17046331-17046385)
chr5 (529-575)||(28447486-28447532)
chr5 (524-582)||(34436837-34436895)
chr5 (529-574)||(4432110-4432155)
chr5 (524-557)||(7861018-7861051)
chr5 (512-577)||(8885246-8885311)
chr5 (525-574)||(42663222-42663271)
[»] chr3 (19 HSPs)
chr3 (529-576)||(7827500-7827547)
chr3 (529-576)||(7829888-7829935)
chr3 (524-575)||(32753821-32753872)
chr3 (525-580)||(48924337-48924392)
chr3 (524-570)||(48517669-48517715)
chr3 (524-569)||(12976619-12976664)
chr3 (524-576)||(28093346-28093398)
chr3 (519-577)||(7738660-7738718)
chr3 (519-569)||(10922320-10922370)
chr3 (517-567)||(39869817-39869867)
chr3 (519-573)||(46226089-46226143)
chr3 (529-574)||(7464513-7464558)
chr3 (524-573)||(8139710-8139759)
chr3 (512-577)||(9598430-9598495)
chr3 (529-578)||(22462302-22462351)
chr3 (529-578)||(23332640-23332689)
chr3 (524-577)||(28052399-28052452)
chr3 (388-425)||(31110632-31110669)
chr3 (521-574)||(38387966-38388019)
[»] scaffold0160 (1 HSPs)
scaffold0160 (512-575)||(22904-22967)
[»] scaffold0143 (1 HSPs)
scaffold0143 (524-571)||(4463-4510)
[»] scaffold0016 (1 HSPs)
scaffold0016 (524-574)||(99031-99081)
[»] scaffold0045 (2 HSPs)
scaffold0045 (525-574)||(63856-63905)
scaffold0045 (525-574)||(71188-71237)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 9e-97; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 39292771 - 39292503
Alignment:
Q  1 ttccatcttcttctaccgtaaatcttgttcgagatctatataactagttgcaatannnnnnnnng-aaatatagttgcaagatatttttgtcaattacta 99  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||         | ||||||||||||||||||||||| |||| |||||    
T  39292771 ttccttcttcttctaccgtaaatcttgttcgagatctttataactagttgcaatatatttttttggaaatatagttgcaagatatttttctcaactacta 39292672  T
Q  100 agtcttatattcggtaatttaattaacacttgtgttctgctttgtaatatnnnnnnnnn--ccttgtattgtgcagtatatacttgaaacaagcgtgttt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  39292671 agtcttatattcggtaatttaattaacacttgtgttctgctttgtaatataaaaaaaaaaaccttgtattgtgcagtatatacttgaaacaagcgtgttt 39292572  T
Q  198 ccaagagaacacccatgcttgaaggagcttagggagatgacactaacacaccctaagtaagaccgtaga 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39292571 ccaagagaacacccatgcttgaaggagcttagggagatgacactaacacaccctaagtaagaccgtaga 39292503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 679 - 804
Target Start/End: Complemental strand, 39292209 - 39292080
Alignment:
Q  679 taatgttttaaatgaatctcaattactcaaatcttgaaagtttacacataaagatgtattaattaattaat----gacatacacgattgatgttgtaaaa 774  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  39292209 taatgttttaaatgaatctcaattactcatatcttcaaagtttacacataaagatgtattaattaattaattaatgacatacacgattgatgttgtaaaa 39292110  T
Q  775 caggtatatgatggctacacccggtgatga 804  Q
    ||||||||||||||||||||||||||||||    
T  39292109 caggtatatgatggctacacccggtgatga 39292080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 39235421 - 39235494
Alignment:
Q  166 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 239  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  | |||||||||    
T  39235421 ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgaca 39235494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 39047759 - 39047822
Alignment:
Q  164 tattgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagctt 227  Q
    ||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||    
T  39047759 tattgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagctt 39047822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 39053763 - 39053836
Alignment:
Q  166 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 239  Q
    ||||||||||||||||||| ||||| ||||||||||  |||||||| ||||||||||||||| | |||||||||    
T  39053763 ttgtgcagtatatacttgacacaagtgtgtttccaaatgaacacccttgcttgaaggagcttcgtgagatgaca 39053836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 575
Target Start/End: Complemental strand, 36203290 - 36203229
Alignment:
Q  514 aatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    ||||||||| |||| |||||||||||||||||| |||||||| |  ||| ||||||||||||    
T  36203290 aatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggaca 36203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 37175798 - 37175842
Alignment:
Q  392 aatatgttgaatgcataatttttaagataaagttgctactttaag 436  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  37175798 aataagttgaatgcataatttccaagataaagttgctactttaag 37175842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 39292353 - 39292309
Alignment:
Q  392 aatatgttgaatgcataatttttaagataaagttgctactttaag 436  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  39292353 aataagttgaatgcataatttccaagataaagttgctactttaag 39292309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 20096287 - 20096338
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| |||||||||||||| |||||| ||||| | |||||||||||||||||    
T  20096287 cttgcatatattatgcattatccctaccaactgagttaaactcacgaggaca 20096338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 13121588 - 13121538
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||| ||||||||||||||||||||| |||||||  ||| |||||||||||    
T  13121588 cttgcatatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 577
Target Start/End: Complemental strand, 13276178 - 13276120
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||| ||||||||||||||    
T  13276178 cggaccttgcatatattatgcattgtccctaccaattgagttaagctcacgaggacaaa 13276120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 18541544 - 18541506
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaa 563  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  18541544 ttgtatatattatgcattgtttctatcaactaaattaaa 18541506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 18635574 - 18635524
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||| ||||    
T  18635574 cttgtatatattatgcattgtccttatcaactgagttaagctcacggggac 18635524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 22164291 - 22164337
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||||||||||||| |||| |||||||  ||||||||||||||||    
T  22164291 atatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 575
Target Start/End: Complemental strand, 29737712 - 29737666
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||||||||||||| |||| |||||||||||| ||||| ||||||    
T  29737712 atatattatgcattgttcctagcaactaaattaagctcacaaggaca 29737666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 574
Target Start/End: Complemental strand, 33024192 - 33024150
Alignment:
Q  532 tattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  33024192 tattatgcattgtccataccaactaagttaaactcacgaggac 33024150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 575
Target Start/End: Complemental strand, 43722804 - 43722758
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||||||||||||||| || ||||| | |||||||||||||||||    
T  43722804 atatattatgcattgtccataccaactgagttaaactcacgaggaca 43722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 577
Target Start/End: Complemental strand, 8495035 - 8494978
Alignment:
Q  520 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||| ||||||||||||||||||||| ||||| |  |||  |||||||||||||    
T  8495035 ggatcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggacaaa 8494978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 577
Target Start/End: Original strand, 11286786 - 11286851
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||| || |||| ||||||||||||||||| ||| ||||| || ||| |||| |||||||||    
T  11286786 tgaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctcaggaggacaaa 11286851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 569
Target Start/End: Complemental strand, 38375001 - 38374956
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 569  Q
    |||| ||||||||||||||||||||| ||||||| |||| ||||||    
T  38375001 cttgcatatattatgcattgtccctaccaactaagttaagctcacg 38374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 38812862 - 38812919
Alignment:
Q  520 ggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||| ||||||||||||||||||||| | ||| |  |||||||||||| |||||    
T  38812862 ggatcttgcatatattatgcattgtccctaccgactgagctaaactcacgagaacaaa 38812919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 7562764 - 7562837
Alignment:
Q  166 ttgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagcttagggagatgaca 239  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  | |||||||||    
T  7562764 ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgaca 7562837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 512 - 575
Target Start/End: Original strand, 964746 - 964809
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||| | |||| ||||||||||||    
T  964746 tgaatctcggatcttatatatattatgcattgtttctatcgactgagttaagctcacgaggaca 964809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 519 - 570
Target Start/End: Original strand, 1285081 - 1285132
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 570  Q
    ||||||||| |||||||||||||||| |||||||||| | ||||||||||||    
T  1285081 cggatcttgcatatattatgcattgttcctatcaactgagttaaactcacga 1285132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 577
Target Start/End: Complemental strand, 3584260 - 3584195
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||| | |||| |||||||||||||||||| || ||||||| |||| ||| ||||||||||    
T  3584260 tgaatctcgtaccttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggacaaa 3584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 578
Target Start/End: Complemental strand, 22267620 - 22267571
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 578  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||||||||    
T  22267620 atatattatgcattgtctctaccaactgagttaaactcacgaggacaaag 22267571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 24934794 - 24934749
Alignment:
Q  390 ttaatatgttgaatgcataatttttaagataaagttgctactttaa 435  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||    
T  24934794 ttaataagttgaatgcacaatttctaagataaagttgctactttaa 24934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 523 - 571
Target Start/End: Complemental strand, 3948099 - 3948051
Alignment:
Q  523 tcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 571  Q
    ||||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  3948099 tcttgcatatattatgcattgtctctatcaactgagttaaactcacgag 3948051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 576
Target Start/End: Complemental strand, 35222968 - 35222916
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    |||| |||||| |||||||||||||||||||| |  |||||||||||||||||    
T  35222968 cttgcatatatcatgcattgtccctatcaactgacctaaactcacgaggacaa 35222916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 575
Target Start/End: Original strand, 42829246 - 42829302
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  42829246 cggagcttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 42829302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 577
Target Start/End: Complemental strand, 20762874 - 20762831
Alignment:
Q  534 ttatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||||| |||||||||| || ||||||||||||||||||    
T  20762874 ttatgcattgttcctatcaactgaactaaactcacgaggacaaa 20762831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 30857292 - 30857241
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| |||||||||||||||||| || |||||||  ||||||||||||||||    
T  30857292 cttgcatatattatgcattgtccataccaactaagctaaactcacgaggaca 30857241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 575
Target Start/End: Complemental strand, 1399217 - 1399155
Alignment:
Q  513 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    ||||||| || |||| |||||| ||||||||||| || ||||| | |||||||||||||||||    
T  1399217 gaatctcagaccttgcatatatcatgcattgtccataccaactgagttaaactcacgaggaca 1399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 521 - 555
Target Start/End: Original strand, 28479870 - 28479904
Alignment:
Q  521 gatcttgtatatattatgcattgtccctatcaact 555  Q
    |||||||||||||||||||||||||| ||||||||    
T  28479870 gatcttgtatatattatgcattgtccttatcaact 28479904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 574
Target Start/End: Complemental strand, 5352384 - 5352323
Alignment:
Q  513 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||| ||||||||||||||| ||||||| || ||||| |  ||| |||||||||||    
T  5352384 gaatctcggaccttgtatatattatgtattgtccttaccaactgagctaagctcacgaggac 5352323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 555
Target Start/End: Original strand, 37307885 - 37307922
Alignment:
Q  518 tcggatcttgtatatattatgcattgtccctatcaact 555  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  37307885 tcggatcttgcatatattatgcattgttcctatcaact 37307922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 576
Target Start/End: Original strand, 22388197 - 22388244
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  22388197 atatattatgcattgtccctatcaactaagttaaacttacgaggacaa 22388244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 576
Target Start/End: Original strand, 41573291 - 41573338
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  41573291 atatattatgcattgtccctaccaactgagttaaactcacgaggacaa 41573338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 517 - 576
Target Start/End: Original strand, 43840335 - 43840394
Alignment:
Q  517 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    ||||||||||  |||| ||||||||||||| |||||||| | ||||||||||||||||||    
T  43840335 ctcggatcttacatattttatgcattgtccatatcaactgagttaaactcacgaggacaa 43840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 575
Target Start/End: Complemental strand, 41998394 - 41998344
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||||||||    
T  41998394 ttgtatatattatgaattgtccctatcaactgagttaatctcacgaggaca 41998344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 2884462 - 2884515
Alignment:
Q  521 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||||||||||||||||||| |||||||| | ||||  ||||||||||    
T  2884462 gatcttgtatatattatgcattgtccatatcaactgagttaaggtcacgaggac 2884515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 577
Target Start/End: Complemental strand, 18091247 - 18091194
Alignment:
Q  525 ttgtatatatt-atgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  18091247 ttgtatatatttatgcattgtccctatcaactgagttaagctcacgaggacaaa 18091194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 574
Target Start/End: Complemental strand, 27853410 - 27853349
Alignment:
Q  513 gaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||| |||||||||||||||||||||||||| | || ||||| | |||| |||||||||||    
T  27853410 gaatcccggatcttgtatatattatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 573
Target Start/End: Complemental strand, 44221031 - 44220982
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 573  Q
    |||||||||||| ||||||||| ||||||||||| |||| ||||||||||    
T  44221031 cttgtatatattgtgcattgtctctatcaactaagttaagctcacgagga 44220982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 568
Target Start/End: Complemental strand, 49868067 - 49868011
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcac 568  Q
    ||||||||||| |||| |||||||||||||| ||| |||||||| | ||||||||||    
T  49868067 tgaatctcggaccttgcatatattatgcattatccatatcaactgagttaaactcac 49868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 575
Target Start/End: Complemental strand, 7732478 - 7732415
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||| ||||||||| |||||||||||||| |||  ||||||| |  ||||||||||||||||    
T  7732478 tgaatcccggatcttggatatattatgcattatccaaatcaactgagctaaactcacgaggaca 7732415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 16033467 - 16033518
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| ||||||||||||||||||||||||||| | | || ||||||||||||    
T  16033467 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 16033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 576
Target Start/End: Original strand, 29701342 - 29701389
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    |||||||||||||||||| |||||||||| |||| ||||||| |||||    
T  29701342 atatattatgcattgtccatatcaactaagttaagctcacgaagacaa 29701389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 571
Target Start/End: Complemental strand, 41974805 - 41974758
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 571  Q
    |||| |||||||||||||| |||||||||||| || ||||||||||||    
T  41974805 cttgcatatattatgcattatccctatcaactgaactaaactcacgag 41974758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 30678835 - 30678881
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    ||||||||||||||||||||| ||||| | |||| ||||||||||||    
T  30678835 atatattatgcattgtccctaccaactgagttaagctcacgaggaca 30678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 576
Target Start/End: Complemental strand, 41032981 - 41032923
Alignment:
Q  518 tcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    ||||| ||||||||| ||||||||||| | |||||||| | |||| |||||||||||||    
T  41032981 tcggaccttgtatattttatgcattgttcatatcaactgagttaagctcacgaggacaa 41032923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 44641571 - 44641521
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||| |||||||||||||||||| |||||||| |  |||||||||||||||    
T  44641571 cttgcatatattatgcattgtccatatcaactgagctaaactcacgaggac 44641521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 9116894 - 9116935
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacga 570  Q
    |||||||||||||||||| |||||||| | ||||||||||||    
T  9116894 atatattatgcattgtccatatcaactgagttaaactcacga 9116935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 577
Target Start/End: Complemental strand, 11014288 - 11014223
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||| || |||||| |||||||||||| |||| ||| ||||| |  ||||||||||||||||||    
T  11014288 tgaatcccgaatcttgcatatattatgcactgtctctaccaactgagctaaactcacgaggacaaa 11014223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 573
Target Start/End: Original strand, 23772282 - 23772343
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 573  Q
    |||||||| ||||||||||||||||| |||||| ||||  |||| || |||| |||||||||    
T  23772282 tgaatctcagatcttgtatatattatacattgttcctacaaactgaactaaattcacgagga 23772343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 545
Target Start/End: Original strand, 27687617 - 27687650
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtc 545  Q
    ||||||||| ||||||||||||||||||||||||    
T  27687617 tgaatctcgtatcttgtatatattatgcattgtc 27687650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 576
Target Start/End: Complemental strand, 41973304 - 41973247
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    |||| |||| ||||||||||||||||||||| ||| ||| |||| ||| |||||||||    
T  41973304 cggaccttgcatatattatgcattgtccctaccaattaagttaagctcgcgaggacaa 41973247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 519 - 577
Target Start/End: Complemental strand, 11931654 - 11931596
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||| ||||||||||||||||||||| ||| |||| ||| ||||||||||||||    
T  11931654 cggatcttgcatatattatgcattgtccctaccaattaaactaagctcacgaggacaaa 11931596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 29896311 - 29896362
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||||||    
T  29896311 cttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 521 - 571
Target Start/End: Complemental strand, 1238209 - 1238159
Alignment:
Q  521 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 571  Q
    ||||||||||||||||||||||||||||||||| | | |||| ||||||||    
T  1238209 gatcttgtatatattatgcattgtccctatcaattgagttaagctcacgag 1238159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 577
Target Start/End: Original strand, 3197096 - 3197149
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||| ||||||||||||||||||||| ||||| |  ||||||||||||||||||    
T  3197096 cttgcatatattatgcattgtccctaccaactgagctaaactcacgaggacaaa 3197149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 3904241 - 3904204
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactc 566  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  3904241 atatattatgcattgtccctatcaactaagttaaactc 3904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 577
Target Start/End: Original strand, 28277698 - 28277746
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||||||||||||| || |||||||  ||||||||||||||||||    
T  28277698 atatattatgcattgtccttaccaactaagctaaactcacgaggacaaa 28277746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 577
Target Start/End: Complemental strand, 45032740 - 45032684
Alignment:
Q  521 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||| ||||||||||||||||||||| ||||| |  ||| ||||||||||||||    
T  45032740 gatcttgcatatattatgcattgtccctaccaactgaggtaagctcacgaggacaaa 45032684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 6238587 - 6238634
Alignment:
Q  530 tatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||||||||||||||| ||| |||  ||||||||||||||||||    
T  6238587 tatattatgcattgtccctaccaattaagctaaactcacgaggacaaa 6238634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 7262862 - 7262819
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaact 555  Q
    |||||||  |||||||||||||||||||||||||| ||||||||    
T  7262862 tgaatctttgatcttgtatatattatgcattgtccatatcaact 7262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 27244701 - 27244650
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| ||||||||||||||||||||||||||| |  ||| ||||||||||||    
T  27244701 cttgcatatattatgcattgtccctatcaactgagctaagctcacgaggaca 27244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 571
Target Start/End: Original strand, 34364512 - 34364559
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 571  Q
    ||||||||||||||||||| | |||| ||||||| |||||||||||||    
T  34364512 cttgtatatattatgcattattcctaccaactaagttaaactcacgag 34364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 37830769 - 37830726
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaact 555  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||    
T  37830769 tgaatcttggatcttgtatatattatgtattgtccctaccaact 37830726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Original strand, 6723094 - 6723144
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||| ||||||||| |||||||| |||||||| | ||||||||||||||||    
T  6723094 cttgcatatattatacattgtccatatcaactgagttaaactcacgaggac 6723144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 573
Target Start/End: Complemental strand, 7537159 - 7537105
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 573  Q
    |||| |||| |||||||||||||||| |||||||||| | |||| ||||||||||    
T  7537159 cggaccttgcatatattatgcattgttcctatcaactgagttaatctcacgagga 7537105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 577
Target Start/End: Original strand, 9517021 - 9517079
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||||||||||||||||||||| | || ||||| |  ||| ||||||||||||||    
T  9517021 cggatcttgtatatattatgcattgttcataccaactgagctaatctcacgaggacaaa 9517079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 17897868 - 17897902
Alignment:
Q  388 ttttaatatgttgaatgcataatttttaagataaa 422  Q
    ||||||||||||||||||| |||||||||||||||    
T  17897868 ttttaatatgttgaatgcacaatttttaagataaa 17897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 528 - 574
Target Start/End: Original strand, 43356654 - 43356700
Alignment:
Q  528 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||||||||||||||| |||||||  ||||||||| |||||    
T  43356654 tatatattatgcattgtccctaacaactaagataaactcactaggac 43356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 570
Target Start/End: Original strand, 13922650 - 13922695
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaactcacga 570  Q
    ||||||||||||||||||||||||| ||||| | |||| |||||||    
T  13922650 ttgtatatattatgcattgtccctaccaactgagttaagctcacga 13922695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 30045509 - 30045472
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtcccta 549  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30045509 tgaatctcgaaccttgtatatattatgcattgtcccta 30045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 30050672 - 30050635
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtcccta 549  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30050672 tgaatctcgaaccttgtatatattatgcattgtcccta 30050635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 30141716 - 30141679
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtcccta 549  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30141716 tgaatctcgaaccttgtatatattatgcattgtcccta 30141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 570
Target Start/End: Original strand, 30929059 - 30929108
Alignment:
Q  521 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacga 570  Q
    |||||| ||||||||||||||||||| |||||||| | ||||||| ||||    
T  30929059 gatcttatatatattatgcattgtccatatcaactgagttaaacttacga 30929108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 39955494 - 39955531
Alignment:
Q  388 ttttaatatgttgaatgcataatttttaagataaagtt 425  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  39955494 ttttaatatgttgaatgcacaattttaaagataaagtt 39955531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 524 - 577
Target Start/End: Complemental strand, 7553723 - 7553670
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  7553723 cttgcatatattatgcattgtccctaccaactgagttaaactcacgaggacaaa 7553670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 3036534 - 3036581
Alignment:
Q  388 ttttaatatgttgaatgcataatttttaagataaagttgctactttaa 435  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||    
T  3036534 ttttaataagttgaatacacaatttttaagataaagttgctactttaa 3036581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 24696011 - 24696054
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaact 555  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  24696011 tgaatctcggatcttgcatatattatgcattgtccatatcaact 24696054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 577
Target Start/End: Original strand, 26886054 - 26886112
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||  |||| ||||||||||||| || ||||||| |||||||||||||||||||    
T  26886054 cggatcttacatattttatgcattgtccataccaactaagttaaactcacgaggacaaa 26886112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 575
Target Start/End: Complemental strand, 8837969 - 8837913
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| |||||||||||||||||||||||||||||||  | ||||  |||||||||||    
T  8837969 cggaccttgtatatattatgcattgtccctatcaaccgagttaagttcacgaggaca 8837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 6109213 - 6109162
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    ||||||||| ||||||||||||| |||||||| |  ||||||||||||||||    
T  6109213 cttgtatattttatgcattgtccatatcaactgatataaactcacgaggaca 6109162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 574
Target Start/End: Complemental strand, 6447238 - 6447183
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||| |||| |||||||||||||||||| || ||||| | ||||||||||||||||    
T  6447238 cggaccttgcatatattatgcattgtccataccaactgagttaaactcacgaggac 6447183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 576
Target Start/End: Complemental strand, 13575340 - 13575281
Alignment:
Q  517 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    |||||| |||| |||| |||||||||||||||| ||||| |  |||||||||||||||||    
T  13575340 ctcggaacttgcatatgttatgcattgtccctaccaactgagctaaactcacgaggacaa 13575281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 571
Target Start/End: Original strand, 33482166 - 33482213
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 571  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  33482166 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 33482213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 521 - 575
Target Start/End: Complemental strand, 8687913 - 8687859
Alignment:
Q  521 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    ||||||||||||||||| ||||||||||| ||| | | ||||| |||||||||||    
T  8687913 gatcttgtatatattatacattgtccctaccaattgagttaaattcacgaggaca 8687859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 574
Target Start/End: Complemental strand, 8982610 - 8982561
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||||||||||||| | ||  |||| ||||||||||||||||||    
T  8982610 ttgtatatattatgcattgttcatactaactgaattaaactcacgaggac 8982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 569
Target Start/End: Complemental strand, 10601819 - 10601762
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 569  Q
    |||||| || |||||| |||||||||||||||||| || ||||| |||||| ||||||    
T  10601819 tgaatcccgaatcttgcatatattatgcattgtccataccaactgaattaagctcacg 10601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 577
Target Start/End: Complemental strand, 14303209 - 14303156
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||||||||| |||||||| || ||||| |  ||||||||||||||||||    
T  14303209 cttgtatatattatacattgtccataccaactgagctaaactcacgaggacaaa 14303156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 574
Target Start/End: Original strand, 32223901 - 32223946
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||||||||||||| ||||||||| || ||| |||||||||||    
T  32223901 atatattatgcattgtctctatcaactgaactaagctcacgaggac 32223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 577
Target Start/End: Complemental strand, 33620942 - 33620889
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||||||||||||||||| ||  |||| | |||||||||||| ||||||    
T  33620942 cttgtatatattatgcattgtccatactaactgagttaaactcacgaagacaaa 33620889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 2692271 - 2692228
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaact 555  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  2692271 tgaatctcggatcttgcatatattatgcattgtccatatcaact 2692228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 530 - 574
Target Start/End: Complemental strand, 7927738 - 7927694
Alignment:
Q  530 tatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||||||||||||||||||| || ||| |||||||||||    
T  7927738 tatattatgcattgtccctatcaactgaactaagctcacgaggac 7927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 28478663 - 28478711
Alignment:
Q  388 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 436  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  28478663 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 28478711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 29791118 - 29791166
Alignment:
Q  388 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 436  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  29791118 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 29791166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 12412321 - 12412270
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| ||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  12412321 cttgcatatattatgcattgtctctaccaactaagttaagctcacgaggaca 12412270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 8809362 - 8809300
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||| ||||||||||| ||||||||||||||||   |||||| | || |||||||||||||||    
T  8809362 tgaacctcggatcttgcatatattatgcattgtttttatcaattgaactaaactcacgaggac 8809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 528 - 574
Target Start/End: Original strand, 12336347 - 12336393
Alignment:
Q  528 tatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||||||||||||||| ||| |||| | ||||||||||||||||    
T  12336347 tatatattatgcattgtccatattaactgagttaaactcacgaggac 12336393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 574
Target Start/End: Complemental strand, 21885023 - 21884981
Alignment:
Q  532 tattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||    
T  21885023 tattatgcattgtccctatcaattaagttaaacttacgaggac 21884981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 575
Target Start/End: Complemental strand, 2445345 - 2445292
Alignment:
Q  522 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    ||||||||||||||||||||||| | |||||||| | |||| || |||||||||    
T  2445345 atcttgtatatattatgcattgttcatatcaactgagttaagcttacgaggaca 2445292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 3373396 - 3373449
Alignment:
Q  522 atcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||| |||||||||||||||||| |||||||| | ||||| |||||| ||||    
T  3373396 atcttgcatatattatgcattgtccatatcaactgagttaaattcacgaagaca 3373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 577
Target Start/End: Complemental strand, 31971585 - 31971520
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||| |||||| |||| |||||||||||||||||| || ||||| | |||| || |||||||||||    
T  31971585 tgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagcttacgaggacaaa 31971520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 40446027 - 40445976
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| |||||||||||||||||| |||||||| | |||||||||||||||||    
T  40446027 cttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 577
Target Start/End: Original strand, 1082224 - 1082289
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||| || ||| |||| |||| ||||    
T  1082224 tgaatctcggaccttgtatatattatacattgtccctaccaactgaactaagctcatgagggcaaa 1082289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 579
Target Start/End: Original strand, 8545001 - 8545061
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaaga 579  Q
    |||| |||| |||||||||||||||||| |||||||| | |||| |||||||| |||||||    
T  8545001 cggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaacaaaga 8545061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 577
Target Start/End: Complemental strand, 10531579 - 10531531
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||||||||||||||||| || |||||||| ||| ||||||||||||||    
T  10531579 atatattatgcattgtccatagcaactaaactaagctcacgaggacaaa 10531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 571
Target Start/End: Complemental strand, 17046385 - 17046331
Alignment:
Q  517 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgag 571  Q
    ||||||||||| |||||||||||||||||| || ||||| | |||| ||||||||    
T  17046385 ctcggatcttgcatatattatgcattgtccataccaactgagttaagctcacgag 17046331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 575
Target Start/End: Complemental strand, 28447532 - 28447486
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||||||||||||||||||  |||| | |||||||||||||||||    
T  28447532 atatattatgcattgtccctactaactgagttaaactcacgaggaca 28447486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 582
Target Start/End: Complemental strand, 34436895 - 34436837
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagacat 582  Q
    |||| ||||||||||||||||||||| ||||| |  ||| |||||||||||| ||||||    
T  34436895 cttgcatatattatgcattgtccctaccaactgagctaagctcacgaggacagagacat 34436837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 4432155 - 4432110
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||    
T  4432155 atatattatgcattgtccttatcaactgagttaaacttacgaggac 4432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 557
Target Start/End: Original strand, 7861018 - 7861051
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaa 557  Q
    |||| |||||||||||||||||||||||||||||    
T  7861018 cttgcatatattatgcattgtccctatcaactaa 7861051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 577
Target Start/End: Original strand, 8885246 - 8885311
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||| | |||| |||| |||||||||||||| ||||| | | ||| |||||||||||||||    
T  8885246 tgaatctcgtaccttgcatattttatgcattgtcccaatcaaatgagttatactcacgaggacaaa 8885311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 574
Target Start/End: Original strand, 42663222 - 42663271
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||||||||||||| ||||| |||| ||||| | ||||||||||||||||    
T  42663222 ttgtatatattatgtattgttcctaacaactgagttaaactcacgaggac 42663271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 576
Target Start/End: Complemental strand, 7827547 - 7827500
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7827547 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 576
Target Start/End: Complemental strand, 7829935 - 7829888
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||    
T  7829935 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7829888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 32753872 - 32753821
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||||||||||||||||||||||||||||||| | | || ||||||||||||    
T  32753872 cttgtatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 32753821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 580
Target Start/End: Original strand, 48924337 - 48924392
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaagac 580  Q
    ||||||||||||| ||||||||||| |||||||  |||||||||||||||| ||||    
T  48924337 ttgtatatattatacattgtccctaccaactaagctaaactcacgaggacagagac 48924392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 48517715 - 48517669
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacga 570  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||    
T  48517715 cttgtatatattatgcattgttcctatcaactgagttaaactcacga 48517669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 569
Target Start/End: Original strand, 12976619 - 12976664
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacg 569  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||    
T  12976619 cttgcatatattatgcattgtccctatcaactgagttaaactcacg 12976664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 576
Target Start/End: Complemental strand, 28093398 - 28093346
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaa 576  Q
    |||| |||||||||||||||||| || ||||| ||||||||||||| ||||||    
T  28093398 cttgcatatattatgcattgtccataccaactgaattaaactcacggggacaa 28093346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 577
Target Start/End: Complemental strand, 7738718 - 7738660
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||| |||| |||| |||||||||||||||| ||||| | |||| ||||||||||||||    
T  7738718 cggaccttgcatattttatgcattgtccctaccaactgagttaagctcacgaggacaaa 7738660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 569
Target Start/End: Original strand, 10922320 - 10922370
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacg 569  Q
    ||||||||| ||||||||||||||||||||| ||||| | |||| ||||||    
T  10922320 cggatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 567
Target Start/End: Original strand, 39869817 - 39869867
Alignment:
Q  517 ctcggatcttgtatatattatgcattgtccctatcaactaaattaaactca 567  Q
    |||||| ||||||||||||||||||||||| || ||||| | |||||||||    
T  39869817 ctcggaccttgtatatattatgcattgtccttaccaactgagttaaactca 39869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 46226089 - 46226143
Alignment:
Q  519 cggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 573  Q
    |||| |||| ||||||||||||||||||||| ||| | | |||||||||||||||    
T  46226089 cggaccttgcatatattatgcattgtccctaccaattgagttaaactcacgagga 46226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 574
Target Start/End: Original strand, 7464513 - 7464558
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||||||||||||||||| ||||| | |||| |||||||||||    
T  7464513 atatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 573
Target Start/End: Complemental strand, 8139759 - 8139710
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgagga 573  Q
    |||| |||||||||||||||||| || |||||||| ||| ||||||||||    
T  8139759 cttgcatatattatgcattgtccataccaactaaactaagctcacgagga 8139710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 577
Target Start/End: Complemental strand, 9598495 - 9598430
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    ||||||||||| |||| |||| |||| ||||||||| | ||||| || ||| ||||||||||||||    
T  9598495 tgaatctcggaccttgcatattttatacattgtcccaaccaactgaactaagctcacgaggacaaa 9598430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 578
Target Start/End: Complemental strand, 22462351 - 22462302
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 578  Q
    |||||||||||||||||| |||||||| | |||| |||||| ||||||||    
T  22462351 atatattatgcattgtccttatcaactgagttaagctcacggggacaaag 22462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 578
Target Start/End: Complemental strand, 23332689 - 23332640
Alignment:
Q  529 atatattatgcattgtccctatcaactaaattaaactcacgaggacaaag 578  Q
    |||||||||||||||| | |||||||||| ||||  ||||||||||||||    
T  23332689 atatattatgcattgttcatatcaactaagttaagttcacgaggacaaag 23332640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 577
Target Start/End: Original strand, 28052399 - 28052452
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggacaaa 577  Q
    |||| ||| ||||||| ||||||||||||||| || ||||||||| ||||||||    
T  28052399 cttggataaattatgcgttgtccctatcaactgaactaaactcacaaggacaaa 28052452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 31110669 - 31110632
Alignment:
Q  388 ttttaatatgttgaatgcataatttttaagataaagtt 425  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  31110669 ttttaatatctcgaatgcataatttttaagataaagtt 31110632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 574
Target Start/End: Complemental strand, 38388019 - 38387966
Alignment:
Q  521 gatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||| ||||||||||||||||| ||||||||| |  ||| |||||||||||    
T  38388019 gatcttgcatatattatgcattgtcactatcaactgagctaagctcacgaggac 38387966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 575
Target Start/End: Complemental strand, 22967 - 22904
Alignment:
Q  512 tgaatctcggatcttgtatatattatgcattgtccctatcaactaaattaaactcacgaggaca 575  Q
    |||| |||||| |||| |||| ||||||||||| | ||||||||||| ||| ||||||||||||    
T  22967 tgaacctcggaccttgcatattttatgcattgttcatatcaactaaactaagctcacgaggaca 22904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 571
Target Start/End: Complemental strand, 4510 - 4463
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgag 571  Q
    |||| ||| |||||||||||||||||||||||||  ||||||||||||    
T  4510 cttgcataaattatgcattgtccctatcaactaagctaaactcacgag 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 99081 - 99031
Alignment:
Q  524 cttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    |||| ||||||||||||||||||||||||||| | | || |||||||||||    
T  99081 cttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggac 99031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 574
Target Start/End: Complemental strand, 63905 - 63856
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  63905 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 63856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 574
Target Start/End: Complemental strand, 71237 - 71188
Alignment:
Q  525 ttgtatatattatgcattgtccctatcaactaaattaaactcacgaggac 574  Q
    ||||||||||||| ||||||||||| ||||| |  |||||||||||||||    
T  71237 ttgtatatattatacattgtccctaccaactgagctaaactcacgaggac 71188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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