View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291_low_3 (Length: 434)
Name: NF5291_low_3
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 421
Target Start/End: Original strand, 4939261 - 4939650
Alignment:
| Q |
26 |
caatacacgaaaacaagtgcctattgttttagttgatcactaaaacaattgtttctttgctacaatagaaggtagaaaaaacattaacaaatggattcca |
125 |
Q |
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| T |
4939261 |
caataaacgaaaacaagtgcctattgttttaattgatcactataa--actctcccttc-caacaatagaaggtagaaaaaacattaacaaatggattcca |
4939357 |
T |
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| Q |
126 |
ttagtcatcaataatggttgtagataatagtttataatgatcatcattaacattggtgttttttccacaatctgcattttcctgaagtaaaaaagcaaac |
225 |
Q |
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| T |
4939358 |
ttagtcatcaataatggttgtagataatagtttataatgatcatcatcaacattggtgtttttgctacaatctgcattttcctgaagtaaa--------c |
4939449 |
T |
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| Q |
226 |
tcaagttgcacctccacttcacccattgtt----ggtcgttcatttggatcatatt---gtaaacatctttttgtcacatctacaaatacttcccaacat |
318 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4939450 |
tcaagttgcacctccacttcacccattgttaattggtcgttcatttggatcatattattgtaaacatctttttgtcacatctacaaatacttcccaacaa |
4939549 |
T |
|
| Q |
319 |
tttggtgcaatgcttcctttgagatactcatcaatattctcctccattgggagtctctgtctcttaacattttctaacttctccaagcataccacttcta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
4939550 |
tttggtgcaatgcttcctttgagatactcatcaatattctcttctattgggaacctttgtctc--aacattttctaacttttccaagcataccacttcta |
4939647 |
T |
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