View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291_low_7 (Length: 271)
Name: NF5291_low_7
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 73 - 252
Target Start/End: Original strand, 39292792 - 39292971
Alignment:
| Q |
73 |
cctgatgtagtgcatcactcttaaggatagtttcgtgagggagatgaatgttttgctctttcttttcattattggcagccatatctctctctagtgtgtt |
172 |
Q |
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| T |
39292792 |
cctgatgtagtgcatcactcttaaggatagtttcgtgagggagatgaatgttttgctctttcttttcattattggcagccatatctctctctagtgtgtt |
39292891 |
T |
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| Q |
173 |
tacttatcttaattttcttgaactatgaaaagctctctcaatgatgaaacttaatgctccaaaaagctgttggcgagtgt |
252 |
Q |
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| T |
39292892 |
tacttatcttaattttcttggactatgaaaagctctctcaatgatgaaacttaatgctccaaaaagctgtcggcgagtgt |
39292971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 39292740 - 39292782
Alignment:
| Q |
9 |
tcgaagaatatttacggtagaagaagatggaaaagaatagtag |
51 |
Q |
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| T |
39292740 |
tcgaacaagatttacggtagaagaagaaggaaaagaatagtag |
39292782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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