View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-L1_15 (Length: 686)
Name: R108-L1_15
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] R108-L1_15 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 38867398 - 38866856
Alignment:
Q |
1 |
ccaacaattttgaatattgtgatgcatgaataatcactgatatgaactgagtgactcaataatgcattcttttttgccaattgtcatttgacatattatt |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
38867398 |
ccaacaattttgaatattgtgatgcatgaataatcattgatatgaactgagtgactcaataatgcattcttttttgccaattgtcatttgacatattatt |
38867299 |
T |
|
Q |
101 |
caattgtcaaatgaaaagagattgaatgagtgttactaaaagtaccgatttgataatgttttggtctgtttcattcattgaagcaggaacttctcatatt |
200 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
T |
38867298 |
caattgtcaaatgaaaagagattgaattagtgttactaaaagtaccgatttgataatgttttggtctgtttcattcattgaagcaggaacttcacatatt |
38867199 |
T |
|
Q |
201 |
cactatatgcaccttattcaacaacagttttgttttcgttcttcgaaaatggacccttcacacaggcacctagtatgttgagatgcagattctagtatgc |
300 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
T |
38867198 |
cactatatgcaccttattcaacgacagttttgttttcgttcttcgaaaatggacccttcacacaggcacctagtgtgttgagatgcagattctagtatgc |
38867099 |
T |
|
Q |
301 |
agtttccacttctcatcatttggtgtgtatgagtttgccgctaaatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgt |
400 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
38867098 |
agtttccacttctcatcatttggtgtgtatgagtttgccgctaaatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgt |
38866999 |
T |
|
Q |
401 |
tagtgtggagtgggttgataagagtttaagccttactttcaagtgtgccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaa |
500 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
T |
38866998 |
tagtgtggagtgggttgataagagtttaagccttactttcaagtgt-ccatgtggcaagggatatgaggttctaatatgtgcaaacaattgttactacaa |
38866900 |
T |
|
Q |
501 |
gttggtctagaagaatcaaaatgtttaattgattccttggggat |
544 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
38866899 |
gttggtctagaagaatcaaaatgtttaattgattccttggggat |
38866856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 38805650 - 38805983
Alignment:
Q |
1 |
ccaacaattttgaatattgtgatgcatgaataatcactgatatgaactgagtgactcaataatgcattcttttttgccaattgtcatttgacatatt-at |
99 |
Q |
|
|
|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
T |
38805650 |
ccaacaattttgaatattgtaatgcatgaataatctttgatgtgaactgagtgactcaatagtgcattcttttttgccaattgtcatttgacatatttat |
38805749 |
T |
|
Q |
100 |
tcaattgtcaaatgaaaagagattgaatgagtgttactaaaagtaccgatttgataatgttttggtctgtttcattcattgaagcaggaacttctcatat |
199 |
Q |
|
|
||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||| |
|
|
T |
38805750 |
tcaattgtcaaatgaaaagggattgaaggagtgttactaaaagtacccatttgattatgctttggtctgtttcattcattgaagcaggaacttcacatac |
38805849 |
T |
|
Q |
200 |
tcactatatgcaccttattcaacaacagttttgttttcgttcttcgaaaatggacccttcacacaggcacctagtatgttgagatgcagattctagtatg |
299 |
Q |
|
|
|||||| ||||||||||||| || ||||||||||||||||||||| ||||| ||| |||||||||| |||| ||||| ||||| |||| | | || |
|
|
T |
38805850 |
tcactacatgcaccttattcgacgacagttttgttttcgttcttcaaaaatagac----gacacaggcacttagtgtgttgtgatgcggatttgaatttg |
38805945 |
T |
|
Q |
300 |
cagtttccacttctcatcatttggtgtgtatgagtttg |
337 |
Q |
|
|
||||||||| |||||||||||| |||||||| |||||| |
|
|
T |
38805946 |
cagtttccatttctcatcatttagtgtgtatcagtttg |
38805983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 537 - 686
Target Start/End: Complemental strand, 38867543 - 38867394
Alignment:
Q |
537 |
ttggggatatgataaactttgattggtcatcgggtgaaacaaggtctaagtgattattcaatttttggagaacaaatgtgatatattccacattttttag |
636 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
T |
38867543 |
ttggggatatgataaactttgattggtcatcgggtgaaacaaggtctaagtgattattcaatttttagagaacaaatgtgatatattccacattttttag |
38867444 |
T |
|
Q |
637 |
aggacaaaatatcaaagaaattattagttgtttgtttgatatattccaac |
686 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
38867443 |
aggacaaaatatcaaagaaattattagttgtttgtttgatatattccaac |
38867394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 351 - 538
Target Start/End: Original strand, 29426334 - 29426521
Alignment:
Q |
351 |
tcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgcca |
450 |
Q |
|
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
T |
29426334 |
tcatttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaaaccttactttcaagtgt-cca |
29426432 |
T |
|
Q |
451 |
tgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatg-tttaattgattcctt |
538 |
Q |
|
|
|||||||||||||||||||||||||| | |||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
T |
29426433 |
tgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatcaaaatgttttaattgattcctt |
29426521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 350 - 542
Target Start/End: Original strand, 1758872 - 1759063
Alignment:
Q |
350 |
ttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgcc |
449 |
Q |
|
|
||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| || |
|
|
T |
1758872 |
ttcatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatgt-cc |
1758970 |
T |
|
Q |
450 |
atgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttgggg |
542 |
Q |
|
|
||||||||||||||||||||||||||| | |||| ||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||| |
|
|
T |
1758971 |
atgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattccttgggg |
1759063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 341 - 538
Target Start/End: Complemental strand, 29566703 - 29566506
Alignment:
Q |
341 |
ctaaatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttc |
440 |
Q |
|
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||| ||||| || ||||||||||||||||| |
|
|
T |
29566703 |
ctaaatgaattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgtagaatggattgatgagtgtttaagccttactttc |
29566604 |
T |
|
Q |
441 |
aagtgtgccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatg-tttaattgattcctt |
538 |
Q |
|
|
|||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
T |
29566603 |
aagtgt-ccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatcaaaatgttttaattgattcctt |
29566506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 344 - 544
Target Start/End: Original strand, 29169358 - 29169557
Alignment:
Q |
344 |
aatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaag |
443 |
Q |
|
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| || ||| |||||||| |||||||||||||||||| | |
|
|
T |
29169358 |
aatgaattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgtagaatggattgataagtgtttaagccttactttcagg |
29169457 |
T |
|
Q |
444 |
tgtgccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttgggga |
543 |
Q |
|
|
|| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
T |
29169458 |
tgc-ccatgtggcaagggatatgagattctaatatgtgcaaacaattgttactacaagttggtctagaagaatcattatgtttaattgattctttgggga |
29169556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 350 - 527
Target Start/End: Original strand, 29250445 - 29250621
Alignment:
Q |
350 |
ttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgcc |
449 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||| || |
|
|
T |
29250445 |
ttcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtggattgataagtgtttgagccttactttcaagtgt-cc |
29250543 |
T |
|
Q |
450 |
atgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgttta |
527 |
Q |
|
|
||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||| || |||||||| ||||||| |
|
|
T |
29250544 |
atgcggcaagggatatgaggttctaatatgtgctaacaattgctactacaagttggtttacaagaatcagtatgttta |
29250621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 345 - 518
Target Start/End: Original strand, 32432108 - 32432280
Alignment:
Q |
345 |
atgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagt |
444 |
Q |
|
|
|||| ||||||| ||| ||||||||||| |||| | | |||||||||||| |||||||||| |||||| |||| ||| |||||||||||| ||| | || |
|
|
T |
32432108 |
atgaattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggt |
32432207 |
T |
|
Q |
445 |
gtgccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
518 |
Q |
|
|
|| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
T |
32432208 |
gt-ccatgtggcaaggggtatgaggttctaatatgtgcaaacaattgttactacaagttggtgtagaagaatca |
32432280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 348 - 518
Target Start/End: Complemental strand, 27519976 - 27519807
Alignment:
Q |
348 |
agttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtg |
447 |
Q |
|
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
27519976 |
agttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgt- |
27519878 |
T |
|
Q |
448 |
ccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
518 |
Q |
|
|
||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
T |
27519877 |
ccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca |
27519807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 353 - 518
Target Start/End: Original strand, 27463053 - 27463217
Alignment:
Q |
353 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgccatg |
452 |
Q |
|
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
T |
27463053 |
atttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgt-ccatg |
27463151 |
T |
|
Q |
453 |
tggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
518 |
Q |
|
|
|||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
T |
27463152 |
tggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca |
27463217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 353 - 518
Target Start/End: Original strand, 27483425 - 27483589
Alignment:
Q |
353 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgccatg |
452 |
Q |
|
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
T |
27483425 |
atttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgt-ccatg |
27483523 |
T |
|
Q |
453 |
tggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
518 |
Q |
|
|
|||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
T |
27483524 |
tggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca |
27483589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 360 - 518
Target Start/End: Original strand, 27471659 - 27471816
Alignment:
Q |
360 |
tttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgccatgtggcaag |
459 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
T |
27471659 |
tttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgt-ccatgtggcaag |
27471757 |
T |
|
Q |
460 |
ggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
518 |
Q |
|
|
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
T |
27471758 |
ggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca |
27471816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 358 - 535
Target Start/End: Original strand, 18987780 - 18987956
Alignment:
Q |
358 |
tgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgccatgtggca |
457 |
Q |
|
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
T |
18987780 |
tgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtggattgataagtgtttaagccttactttcaagtgt-ccatgtggca |
18987878 |
T |
|
Q |
458 |
agggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattc |
535 |
Q |
|
|
||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||| |
|
|
T |
18987879 |
agggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgcttaatagattc |
18987956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 344 - 518
Target Start/End: Original strand, 25520045 - 25520218
Alignment:
Q |
344 |
aatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaag |
443 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
T |
25520045 |
aatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaag |
25520144 |
T |
|
Q |
444 |
tgtgccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
518 |
Q |
|
|
||| |||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||| |
|
|
T |
25520145 |
tgt-ccatgtagcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtagaagaatca |
25520218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 511
Target Start/End: Complemental strand, 1700074 - 1699948
Alignment:
Q |
384 |
gattatgaagaacctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtgccatgtggcaagggatatgaggttctaatatatgca |
483 |
Q |
|
|
|||| ||||||| |||| ||||| ||||||| ||| || | |||||||||||||||||||| |||||||||||||| ||||||||||| |||| || |
|
|
T |
1700074 |
gattttgaagaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgt-ccatgtggcaagggctatgaggttcttatatcagcc |
1699976 |
T |
|
Q |
484 |
gacaattgttactacaagttggtctaga |
511 |
Q |
|
|
|||||||||| |||||||||||||||| |
|
|
T |
1699975 |
aacaattgttattacaagttggtctaga |
1699948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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