View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L1_24 (Length: 552)
Name: R108-L1_24
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L1_24 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 12219462 - 12219908
Alignment:
| Q |
1 |
tttacttctatcaaatatagcattgtgggtacaacagaagcaagaaaccagcaagaaaanggagatcaacagaagcaa-gaaacctgcagaacatgaatt |
99 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||| | | | | | ||||||||||||||||| |
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| T |
12219462 |
tttacttctatcaaatatagcatcgtggatacaacagaagcaagaaaccagcaagaaaaagaagatcagctgttgtagtgtttcctgcagaacatgaatt |
12219561 |
T |
|
| Q |
100 |
gctatgaataccaccctattctcttgatgctagatattgcagattgaaaaaaggggaagattgtttatacaacattagccagtatgcgctgaaagtactg |
199 |
Q |
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| T |
12219562 |
gctatgaataccaccctattctcttgatgctagatattgcagattgaaaaaaggggaacattgtttatacaactttagccagtatgcgctgaaagtactg |
12219661 |
T |
|
| Q |
200 |
aaaatcaagtaaaaaaccgatctcacggtttctttttcattctaattactt-ggagtactatttgtgtttgatttccaattttggacggtcgacactcct |
298 |
Q |
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| T |
12219662 |
aaaatcaagtaaaaaaccgatctcacggtttctttttcattctaattacttgggagtactatttgtgtttgatttccaattttggacggtcgacactcct |
12219761 |
T |
|
| Q |
299 |
ccagcctacgtcataattcattcattccttgtttac-tcatcttttacaatataaagaagatatttataaaattattagaatttctttttccaatccaat |
397 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |
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| T |
12219762 |
ccagcctacgtcataattcattcattccttgtttacttcatcttttacaatataaagaaggtatttataaaattattagaatttctttttcaaatcaaat |
12219861 |
T |
|
| Q |
398 |
agaaatctgaacatactaaaagtattatccgagtcaaaggtgtgaag |
444 |
Q |
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| T |
12219862 |
agaaatctgaacatactaaaagtattatccgagtcaaaggtgtgaag |
12219908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 388
Target Start/End: Complemental strand, 7426077 - 7425697
Alignment:
| Q |
3 |
tacttctatcaaatatagcattgtgggtacaacagaagcaagaaaccagcaagaaaanggagatcaacagaagcaagaaa-cctgcagaacatgaattgc |
101 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||| | | | ||||||||||||||||||| |
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|
| T |
7426077 |
tacttctatcaaatatagcttcgtgggtacaacacaagcaagaaaccagcaagaaaaaggagatcagttgttgtagcctttcctgcagaacatgaattgc |
7425978 |
T |
|
| Q |
102 |
tatgaataccaccctattctcttgatgctagatattgcagattgaaaaaaggggaagattgtttatacaacattagccagtatgcgctgaaagtactgaa |
201 |
Q |
| |
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| | || |||||| ||| ||||||||||||| || ||||||||||| ||||||||| ||||||||||| || |||| |||||||| | |||| ||||| |
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| T |
7425977 |
tctaaagaccaccttatcctcttgatgctagctactgcagattgaagaaaggggaacattgtttatacgactttagatagtatgcgttacaagtgctgaa |
7425878 |
T |
|
| Q |
202 |
aatcaagtaaaaaaccgatctcacggtttctttttcattctaattacttggagtactatttgtgtttgatttccaattttggacggtcgacactcctcca |
301 |
Q |
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||||||||||||| | | ||||||| ||||||||||||||||||| || | ||| |||||||||||||||||||||||| || |||||||| || |
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| T |
7425877 |
aatcaagtaaaaa--caagctcacgg--tctttttcattctaattac---aaggattatatgtgtttgatttccaattttggactatccacactccttca |
7425785 |
T |
|
| Q |
302 |
gcctacgtcataattcattcattccttgtttac-tcatcttttacaatataaagaagatatttataaaattattagaatttctttttc |
388 |
Q |
| |
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|||| || ||||||||| ||| |||||||||| ||| |||||| || |||||| || ||||||| |||||| | ||||||||||||| |
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|
| T |
7425784 |
acctatgtgataattcatccatcccttgtttacttcagcttttaaaagataaagtaggtatttatgaaattagtggaatttctttttc |
7425697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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