View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L2-1 (Length: 722)
Name: R108-L2-1
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L2-1 |
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| [»] scaffold0743 (3 HSPs) |
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| [»] scaffold1104 (3 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6136 - 6377
Alignment:
| Q |
1 |
gagtcaagggtttgatcatatgttttgcattgaattcaatgtgatgagcttgcttccancagacctagccatctttttgagaggatgttgcatctcacag |
100 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6136 |
gagtcatgggtttgatcatgtgttttgcattgaattcaatgtgatgagcttgcttccat-agacctagccatctttttgagaggatgttgcatctcacag |
6234 |
T |
|
| Q |
101 |
cttcgtcaacatgaagtttggaaaggatgaaggttaagacatcatttggaagcttgttgataaaatcttgtttctcatcactcataaccaccatcttttc |
200 |
Q |
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| T |
6235 |
cttcgtcaacatgaagtttggaaaggatgaaggttaagacatcatttggaagcttgttgataaactcttgtttctcatcactcataaccaccatcttttc |
6334 |
T |
|
| Q |
201 |
catctctatgtctctatcgcaccctctctctttccctcaacct |
243 |
Q |
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| T |
6335 |
catctccatgtctctattgcaccctctctcaatccctcaacct |
6377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 545 - 722
Target Start/End: Original strand, 5963 - 6140
Alignment:
| Q |
545 |
attaatccaagcattcacttccccgattgaaagactcttttgaaaatgaagaaatcgagaactaaataactcacctgagtgacgatgcatcaattgaaag |
644 |
Q |
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| T |
5963 |
attaatccaagcattcacttccccgattgaaagactcttttgaaaatgaagaaatcgagaactaaataactcacctgagtgacgatgcatcaattgaaag |
6062 |
T |
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| Q |
645 |
atttgaataccatatctacaaacttcttttttcatatacggagagagatcaaaagaacctttgtgtaagagctgagtc |
722 |
Q |
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| T |
6063 |
atttgaataccatatctataaactccttttttcatatacggagagagatcaaaagaacctttgtgtaagagctgagtc |
6140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 384 - 530
Target Start/End: Original strand, 6373 - 6518
Alignment:
| Q |
384 |
aaccttttaagtgtaagaataagaaaatatcttacatttagt---tgttcttatccatcttattttttaaagttggaaaaaagtttaaatcantatttac |
480 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||| |||||||| | ||||| |
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| T |
6373 |
aaccttttaagtgcaagaataagaaaatatcttacatttagtctttgttcttatc-atcttattttataaagttggtaaaag--ttaaatcatt-tttac |
6468 |
T |
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| Q |
481 |
gtttccttgtttagattaagaaatagaaggaaaatttttcaaacccatca |
530 |
Q |
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| T |
6469 |
gtttccttgtttagattaagaaatagaaggaaaatttttcaaacccatca |
6518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 213 - 530
Target Start/End: Original strand, 30374894 - 30375203
Alignment:
| Q |
213 |
tctatcgcaccctctctctttccctcaacctctc--ccaagagctattgtataaacacgaaccgcttaattaggagagaaaaaccttttaagttaggcgt |
310 |
Q |
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| T |
30374894 |
tctattgcaccctctctctttccctcaacctctctcccaagagctattgtacaagcacgaaccgcgtgattaggagagaaaa---------gttaggggt |
30374984 |
T |
|
| Q |
311 |
aaagtttgtgaaatttgaactattttttgtgatttgatgatcaaactcttaacactacactcatacaaaacaaaaccttttaagtgtaagaataagaaaa |
410 |
Q |
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| T |
30374985 |
aaagtttgtgaaatttgaactattttttatgatttgatgatcaaactcttaacactacactggtacaaaacaaaaccttttaagtgcaagaataagaaaa |
30375084 |
T |
|
| Q |
411 |
tatcttacatttag---ttgttcttatccatcttattttttaaagttggaaaaaagtttaaatcantatttacgtttccttgtttagattaagaaataga |
507 |
Q |
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| T |
30375085 |
tatcttacatttagtctttgttcttat-catcttattttttaaaattggtaaaa--gttaaatcatt-tttacgttaccttgtttacattaagaaataga |
30375180 |
T |
|
| Q |
508 |
aggaaaatttttcaaacccatca |
530 |
Q |
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| T |
30375181 |
aggaaaatttttcaaacccatca |
30375203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 213 - 530
Target Start/End: Original strand, 30376747 - 30377056
Alignment:
| Q |
213 |
tctatcgcaccctctctctttccctcaacctctc--ccaagagctattgtataaacacgaaccgcttaattaggagagaaaaaccttttaagttaggcgt |
310 |
Q |
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| T |
30376747 |
tctattgcaccctctctctttccctcaacctctctcccaagagctattgtacaagcacgaaccgcgtgattaggagagaaaa---------gttaggggt |
30376837 |
T |
|
| Q |
311 |
aaagtttgtgaaatttgaactattttttgtgatttgatgatcaaactcttaacactacactcatacaaaacaaaaccttttaagtgtaagaataagaaaa |
410 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
30376838 |
aaagttagtgaaatttgaactattttttatgatttgatgatcaaactctaaacactacactgatacaaaacaaaaccttttaagtgcaagaataagaaaa |
30376937 |
T |
|
| Q |
411 |
tatcttacatttag---ttgttcttatccatcttattttttaaagttggaaaaaagtttaaatcantatttacgtttccttgtttagattaagaaataga |
507 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||| |||| |||| |||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
30376938 |
tatcttacatttagtctttgttcttat-catcttattttttaaaattggtaaaa--gttaaatcatt-tttacgtttccttgtttacattaagaaataga |
30377033 |
T |
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| Q |
508 |
aggaaaatttttcaaacccatca |
530 |
Q |
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||||||||||||||||||||||| |
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| T |
30377034 |
aggaaaatttttcaaacccatca |
30377056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 98; Significance: 7e-48; HSPs: 3)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 545 - 722
Target Start/End: Complemental strand, 471 - 294
Alignment:
| Q |
545 |
attaatccaagcattcacttccccgattgaaagactcttttgaaaatgaagaaatcgagaactaaataactcacctgagtgacgatgcatcaattgaaag |
644 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || ||||||||| | ||||||||| |||||||| |||| |
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| T |
471 |
attaatctaagcattcacttccccgattgaaagattctttttaaaatgatgaaatcgagaagtagataactcacttaagtgacgatacatcaattaaaag |
372 |
T |
|
| Q |
645 |
atttgaataccatatctacaaacttcttttttcatatacggagagagatcaaaagaacctttgtgtaagagctgagtc |
722 |
Q |
| |
|
||||||||||||| || |||| | ||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
371 |
gattgaataccatatttaagaactccatttttcatatatggagagagatcaaatgaacctttgtgtaagagttgagtc |
294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 101 - 1
Alignment:
| Q |
319 |
tgaaatttgaactattttttgtgatttgatgatcaaactcttaacactacactcatacaaaacaaaaccttttaagtgtaagaataagaaaatatcttac |
418 |
Q |
| |
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||||||||||||||||||| ||||| || |||||||||||||||||| | | ||||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
101 |
tgaaatttgaactattttta-tgattaaattatcaaactcttaacactaaattgatacaaaacaaaaccatataagtaaaagaataagaaaatatcttac |
3 |
T |
|
| Q |
419 |
at |
420 |
Q |
| |
|
|| |
|
|
| T |
2 |
at |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 288 - 247
Alignment:
| Q |
11 |
tttgatcatatgttttgcattgaattcaatgtgatgagcttg |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
288 |
tttgatcatatgttttgcattgaattcaatgtgatgagcttg |
247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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