View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L2_11 (Length: 453)
Name: R108-L2_11
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L2_11 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 53865909 - 53866215
Alignment:
| Q |
1 |
gagaaaatgtttgcatgatatagttatatacttatatggacttaatgaacaggtaaacgttccggttatagtcgctgcctgcaagcttgacttacaacat |
100 |
Q |
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| T |
53865909 |
gagaaaatgtttgcatgatatagttatatacttatatggacttaatgaacaggtaaacgttccggttatagtcgctgcctgcaagcttgacttacaacat |
53866008 |
T |
|
| Q |
101 |
gataatcaagaggagagcttagaagacgttgaaatcactattcgttgttcagcatatacaactataggggtatatatatatccttcatattattacaatc |
200 |
Q |
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| T |
53866009 |
gataatcaagaggagagcttagaagacgttgaaatcactattcgttgttcagcatatacaactatgggggtatatatatatccttcatattattacaatc |
53866108 |
T |
|
| Q |
201 |
aacaacttcattgttttcaaatattattattaaaaaagtatttcactttacttttcttattgaaggtcgctgatgttttcacctttgcacaatattctgt |
300 |
Q |
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| T |
53866109 |
aacaacttcattgttttcaaatattattattaaaaaagtatttcactttacttttcttattgaaggtcgctgatgttttcacctttgcacaatattctgt |
53866208 |
T |
|
| Q |
301 |
caattgt |
307 |
Q |
| |
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||||||| |
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| T |
53866209 |
caattgt |
53866215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 301 - 453
Target Start/End: Original strand, 53865761 - 53865913
Alignment:
| Q |
301 |
caattgttctcacatatgcatgtgatcggcaagagacacttgaaagactgagttcattttggctcccgcgtcttcgcgatttaggggttctgttctctcc |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53865761 |
caattgttctcacatatacatgtgatcggcaagagacacttgaaagactgagttcattttggctcccgcgtcttcgcgatttaggggttctgttctctcc |
53865860 |
T |
|
| Q |
401 |
tcttttttccatctacactttgttactattgtacactgcatttgtattgagaa |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53865861 |
tcttttttccatctacactttgttactattgtacactgcatttgcattgagaa |
53865913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 54161532 - 54161453
Alignment:
| Q |
309 |
ctcacatatgcatgtgatcggcaagagacacttgaaagactgagttcattttggctcccgcgtcttcgcgatttaggggt |
388 |
Q |
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||||| |||||||||||||| |||| ||||||||||| |||| | ||||||||||||| |||||||||||||| ||||| |
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| T |
54161532 |
ctcacctatgcatgtgatcgccaagccacacttgaaagtctgactgcattttggctccctcgtcttcgcgatttgggggt |
54161453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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