View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L2_14 (Length: 361)
Name: R108-L2_14
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L2_14 |
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| [»] scaffold0743 (2 HSPs) |
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| [»] scaffold1104 (2 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 175 - 361
Target Start/End: Complemental strand, 6322 - 6136
Alignment:
| Q |
175 |
gttatgagtgatgagaaacaagattttatcaacaagcttccaaatgacgtcttaaccttcatcctttccaaacttcatgttgacgaagctgtgagatgca |
274 |
Q |
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| T |
6322 |
gttatgagtgatgagaaacaagagtttatcaacaagcttccaaatgatgtcttaaccttcatcctttccaaacttcatgttgacgaagctgtgagatgca |
6223 |
T |
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| Q |
275 |
acatcctctcaaaaagatggctaggtctttggaagcaagctcatcacattgaattcaatgcaaaacatatgatcaaacccttgactc |
361 |
Q |
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| T |
6222 |
acatcctctcaaaaagatggctaggtctatggaagcaagctcatcacattgaattcaatgcaaaacacatgatcaaacccatgactc |
6136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 6140 - 5967
Alignment:
| Q |
1 |
gactcagctcttacacaaaggttcttttgacctccctccgtatatgaaaaaagaagtttgtagatatggtattcaaatctttcaactgatgcatcgtcac |
100 |
Q |
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| T |
6140 |
gactcagctcttacacaaaggttcttttgatctctctccgtatatgaaaaaaggagtttatagatatggtattcaaatctttcaattgatgcatcgtcac |
6041 |
T |
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| Q |
101 |
tcaggtgagttatttagttctcgatttcttcattttcaaaagagtctttcaatcggggaagtgaatgcttggat |
174 |
Q |
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| T |
6040 |
tcaggtgagttatttagttctcgatttcttcattttcaaaagagtctttcaatcggggaagtgaatgcttggat |
5967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 294 - 463
Alignment:
| Q |
1 |
gactcagctcttacacaaaggttcttttgacctccctccgtatatgaaaaaagaagtttgtagatatggtattcaaatctttcaactgatgcatcgtcac |
100 |
Q |
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| T |
294 |
gactcaactcttacacaaaggttcatttgatctctctccatatatgaaaaatggagttcttaaatatggtattcaatccttttaattgatgtatcgtcac |
393 |
T |
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| Q |
101 |
tcaggtgagttatttagttctcgatttcttcattttcaaaagagtctttcaatcggggaagtgaatgctt |
170 |
Q |
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| T |
394 |
ttaagtgagttatctacttctcgatttcatcattttaaaaagaatctttcaatcggggaagtgaatgctt |
463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 247 - 288
Alignment:
| Q |
310 |
caagctcatcacattgaattcaatgcaaaacatatgatcaaa |
351 |
Q |
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| T |
247 |
caagctcatcacattgaattcaatgcaaaacatatgatcaaa |
288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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