View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L2_55 (Length: 398)
Name: R108-L2_55
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L2_55 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 47835193 - 47835414
Alignment:
| Q |
1 |
aatttctcccaatcgaataatcgccgccttaaattccattccactgccacaaccacaattctccgctccactgtcccatctctgatacagtagcatactt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47835193 |
aattcctcccaatcgaataatcgccgccttaaattc-----cactgccacaaccacaattctccgctccactgtcccatctctgatacagtagcatactt |
47835287 |
T |
|
| Q |
101 |
attctctgcaactgagtacaacctcggatatacatgcattagtggttccggtcccacccatttatagtgccaattttaattttctctcctctgccaagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47835288 |
attctctgcaactgagtacaacctcggatatacatgcattagtggttccggtcccacccatttatagtgccaattttaattttctctcctctgccaagcc |
47835387 |
T |
|
| Q |
201 |
ttaaactaatgccatcaacaaactagt |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
47835388 |
ttaaactaatgccatcaacaaactagt |
47835414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 222 - 396
Target Start/End: Original strand, 47835022 - 47835196
Alignment:
| Q |
222 |
actagtcccatctcattttttactgttaaataattgttactctgcagctaaattgtgtacccggacctgacagattaacctcctgccacatctagcttcc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47835022 |
actagtcccatctcattttttactgttaaataattgttactctgcagctaaattgtgtacccggacctgacagattaacctcctgccacatctagcttcc |
47835121 |
T |
|
| Q |
322 |
acacccacctgtcatgctcccttcagttccgtgaaatctcctgcaacaaaatttataattctctgcttagcaatt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47835122 |
acacccacctgtcatgctcccttcagttccgtgaaatctcctgcaacaaaatttataattctctgcttagcaatt |
47835196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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