View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L3_20 (Length: 655)
Name: R108-L3_20
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L3_20 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 55855719 - 55855364
Alignment:
| Q |
1 |
aaaagaacagttaccaatctgacgcacgatatgaaattaggtgggttagacctccatgaattgcatatatcaagatgaatttggtttatttagataagtg |
100 |
Q |
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| T |
55855719 |
aaaagaacggttaccaatctgacacacgatatgaaattaggtgggtcagacctccatgaattgcatatatcaagatgaatttggtttatttagataagtg |
55855620 |
T |
|
| Q |
101 |
agaaaactaatatcgacggtgtaatcaactatcagtggaaatagtcttgcataggtccattttgttttacattttaataatttcaacctttaataaattt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55855619 |
agaaaactaatatcgacggtgtaatcaactacgagtggaaattgtcttgcataggtccattttgttttatattttaataatttcaacctttaataaattt |
55855520 |
T |
|
| Q |
201 |
caaagtataaaaaattaagattgaaaatgatattattaaagtggatttaaatgttgacaacgacccagtattgaattaagtattgaattaagtactatct |
300 |
Q |
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| T |
55855519 |
caaagtacaaaaaattaagattgaaaatgatattattaaagtggatttaaatgttgacagcgacccagtattgaattaagta------------------ |
55855438 |
T |
|
| Q |
301 |
gccatctggccatgccacgtttaagaggtcaattgtttaggcccacttt-aaaataagtaccctcccaaattaat |
374 |
Q |
| |
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| T |
55855437 |
-ccatctggccatgccatgtttaagaggtcaattgtttaggcccactttaaaaagaagtactatcccaaattaat |
55855364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 147 - 282
Target Start/End: Complemental strand, 55863946 - 55863811
Alignment:
| Q |
147 |
ttgcataggtccattttgttttacattttaataatttcaacctttaataaatttcaaagtataaaaaattaagattgaaaatgatattattaaagtggat |
246 |
Q |
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| T |
55863946 |
ttgcatagatccattttgttttacattttaataatttcaacctttaat-aatttcaaagtacaaaaaattaggattgaaaatgacgttattaaagtggat |
55863848 |
T |
|
| Q |
247 |
ttaaat-gttgacaacgacccagtattgaattaagta |
282 |
Q |
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| T |
55863847 |
ttaaatggatgacggcgacccactattgaattaagta |
55863811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 367 - 500
Target Start/End: Complemental strand, 55856840 - 55856705
Alignment:
| Q |
367 |
aaattaatcagcacccaacaatcaaaaggtctctctcaccaaccataatag-cctnatgttaagntagcnacgtttgtctttagccccccanagaaaaca |
465 |
Q |
| |
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|||||||| |||||| ||||||||||||| |||| |||||||||||||||| ||| |||||||| || | |||||||||||||||| || | |||||| |
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| T |
55856840 |
aaattaattagcacctaacaatcaaaagggctctgtcaccaaccataatagccctaatgttaagttaacaacgtttgtctttagccaccaaagaaaaaca |
55856741 |
T |
|
| Q |
466 |
tgcttaacctttatctagcaa--aagacatanattat |
500 |
Q |
| |
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| T |
55856740 |
tacttaa-ctttatctagaaactaagacatagattat |
55856705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 55864019 - 55863961
Alignment:
| Q |
12 |
taccaatctgacgcacgatatgaaattaggtgggttagacctccatgaattgcatatat |
70 |
Q |
| |
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|||||||| ||| ||| || ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
55864019 |
taccaatccgacacacaatgtgaaattaggtgggttaaacctccatgaattgcatatat |
55863961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 90 - 275
Target Start/End: Original strand, 1995149 - 1995333
Alignment:
| Q |
90 |
ttagataagtgagaaaactaatatcgacggtgtaatcaactatcagtggaaatagtcttgcataggtccattttgttttacattttaataatttcaacct |
189 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1995149 |
ttagttaagtgagaaaactaatatcgacggtgtaatcaactatcagtgaaaattgtcttgcataggtccattttgttttacattttaataattttaacct |
1995248 |
T |
|
| Q |
190 |
ttaataaatttcaaagtataaaaaattaagattgaaaatgatattattaaagtggatttaaatgttgacaacgacccagtattgaa |
275 |
Q |
| |
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||||| |||||||||||| |||| |||| |||||||||| |||||||| |||| ||||||||| ||| | ||||||| ||||||| |
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| T |
1995249 |
ttaat-aatttcaaagtacaaaatattaggattgaaaattatattattgaagtagatttaaattatgatagcgacccaatattgaa |
1995333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 1994707 - 1994780
Alignment:
| Q |
12 |
taccaatctgacgcacgatatgaaattaggtgggttagacctccatgaattgcatatatcaagatgaatttggt |
85 |
Q |
| |
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||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
1994707 |
taccaatctaacacacgatatgaaattaggtgggttggacctccatgaattgcatatatgaagatgaatttggt |
1994780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 1995928 - 1996014
Alignment:
| Q |
289 |
taagtactatctgccatctggccatgccacgtttaagaggtcaattgtttaggcccact-ttaaaataagtaccctcccaaattaat |
374 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||| | |||| ||||||| |||||||||||| |
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| T |
1995928 |
taagtaatatctaccatctggccatgccacgtttaagaggtcaattgtttaagtccactataaaaagaagtaccatcccaaattaat |
1996014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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