View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-L3_21 (Length: 253)
Name: R108-L3_21
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L3_21 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 55856705 - 55856817
Alignment:
| Q |
144 |
ataatctatgtctt--ttgctagataaagttaagcatgtttttctttggtggctaaagacaaacgttgctaacttaacatta-ggctattatggttggtg |
240 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
55856705 |
ataatctatgtcttagtttctagataaagttaagtatgtttttctttggtggctaaagacaaacgttgttaacttaacattagggctattatggttggtg |
55856804 |
T |
|
| Q |
241 |
agagagacctttt |
253 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
55856805 |
acagagccctttt |
55856817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 55855715 - 55855829
Alignment:
| Q |
2 |
ctttttaggctcctttaatgtcttataggtctctaataaatcaagaaataactcctgaatgtannnnnnnnccttctaatttagtttatgtttgagtcat |
101 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
55855715 |
ctttttaggctcctttaatgtcttctaggtctctaataaatcaagaaataact----tatgtgttttttttccttctaatttagtttatgtttgagtcat |
55855810 |
T |
|
| Q |
102 |
ttgaaataaaagaaatgac |
120 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
55855811 |
ttaaaatgaaagaaatgac |
55855829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 55864037 - 55864100
Alignment:
| Q |
2 |
ctttttaggctccttta-atgtcttataggtctctaataaatcaagaaataactcctgaatgta |
64 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
55864037 |
ctttttagggtcctttacatgtcttctaggtctctaataaattaggaaataacttctgaatgta |
55864100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 18680317 - 18680391
Alignment:
| Q |
160 |
gctagataaagttaagcatgtttttctttggtggctaaagacaaacgttgctaacttaacattaggctattatgg |
234 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
18680317 |
gctagatatggttaagcatgtttctcttttgtgactgaagacaaaagttgctaacttagttgtaggctattatgg |
18680391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15897 times since January 2019
Visitors: 3757