View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L3_8 (Length: 522)
Name: R108-L3_8
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L3_8 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 146 - 522
Target Start/End: Complemental strand, 2064129 - 2063761
Alignment:
| Q |
146 |
tcgttatctccatatttcttcatatttcctacactatgagctcacaaggcaaacgtagatactttgggttcattctacaaatattttacgttttttagtt |
245 |
Q |
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| T |
2064129 |
tcgttatctccatatttcttcatatttcctacactatgaattcacaaggcaaacacagatactttggatttattctacaaatattttacgttttttagtt |
2064030 |
T |
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| Q |
246 |
ttacagttacacaatgaaaactgtgagttaaatactcacacctcacctaaagattcaaagtgaagcaagcacttcagagtaaaaaatttgcaaaatcaaa |
345 |
Q |
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| T |
2064029 |
ttacggttacacaatgaaaactgtgagttaaatgctcacacctcacctaaagattcaaagtgaagcaagcacttcagagtaaaaaatttgcaaaatcaaa |
2063930 |
T |
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| Q |
346 |
tttccga---annnnnnnnnnnggagtcctaacagtatattctaaaattatgttaaagtttaagacttcaagtcaaatgattaggaagaatgctatgtgt |
442 |
Q |
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| T |
2063929 |
tttccgatttttttttttttttggagtcctaacagtatgttctaaaattacgttaaagttt-----------tgaaattactaggaagaatgctatgtgt |
2063841 |
T |
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| Q |
443 |
aaacaaagctcaattttagggtcaaaaacatcaaaacaccatcaatcatggtggtcatcaatcaaatagcaaatagtttt |
522 |
Q |
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| T |
2063840 |
aaacaaagctcatttttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagtttt |
2063761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 406 - 522
Target Start/End: Complemental strand, 2060113 - 2059999
Alignment:
| Q |
406 |
gacttcaagtcaaatgattaggaagaatgctatgtgtaaacaaagctcaattttagggtcaaaaacatcaaaacaccatcaatcatggtggtcatcaatc |
505 |
Q |
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| T |
2060113 |
gacttcaagtcaaattattaggaagaact-tatgtataaaaaaagctcatttttagggtcaaaaacatcaaaacacc-tcaatcatggtggtcatcaatc |
2060016 |
T |
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| Q |
506 |
aaatagcaaatagtttt |
522 |
Q |
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| T |
2060015 |
aaatagcaaatagtttt |
2059999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 2055789 - 2055708
Alignment:
| Q |
396 |
taaagtttaagacttcaagtcaaatgattaggaagaatgctatgtgtaaacaaagctcaattttagggtcaaaaacatcaaa |
477 |
Q |
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| T |
2055789 |
taaagtttaagatttcaagtcaaattattaggaagaacgttatgtataaaagaagctcatttttagggtcaaaatcatcaaa |
2055708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 2060298 - 2060223
Alignment:
| Q |
229 |
ttttacgttttttagttttacagttacacaa-tgaaaactgtgagttaaatactcacacctcacctaaagattcaaagtg |
307 |
Q |
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| T |
2060298 |
ttttacgttctttagttttacagtcacacaagtgaaaac--tgagttaaatact--cacctcaccaaaagattcaaagtg |
2060223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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