View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L4 (Length: 615)
Name: R108-L4
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 42525336 - 42524921
Alignment:
| Q |
1 |
cattatagttttgtgattctgatctcaaaattgcagtagtgatgccgttgtagagacctcaaaattatttatattgaggccgcaattgcattgcagttgc |
100 |
Q |
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| T |
42525336 |
cattatagttttgtgattctgatctcaaaattgcagtagtgatgccgttgtagagacctcaaaattatttatattgaggccgcaattgcattgcagttgc |
42525237 |
T |
|
| Q |
101 |
ggacaataatttaataacaaatacaactaaaaaggctacatataatttaaaaactactcatacaatttcacctaaccattttccaatactgtttccataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42525236 |
ggacaataatttaataacaaatacaactaaaaaggctacatataatttaaaaactattcatacaatttcacctaaccattttccaatactgtttccataa |
42525137 |
T |
|
| Q |
201 |
acatgctaattaacaaagcatgctttatacatgaatgctagtcttgcatatgatgtgaaaatgtgaatgtgataatgtaggagtacaaacagtagagact |
300 |
Q |
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| T |
42525136 |
acatgctaattaaccaagcatgctttatacatgaatgttagtcttgcatatgatg--------tgaatgtgataatgtaggagtacaaacagtagagact |
42525045 |
T |
|
| Q |
301 |
gagcatagcacaggaaaggttattgtgacggggaccatggacggcaacaagttagtggattttgtttatagacgaactaaaaagcaagccaaaatagttc |
400 |
Q |
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| T |
42525044 |
gagcatagcacaggaaaggttattgtgacggggaccatggacggcaacaagttagtggattttgtttatagacgaactaaaaagcaagccaaaatagttc |
42524945 |
T |
|
| Q |
401 |
cacaaccagaacctgaaccagcac |
424 |
Q |
| |
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| T |
42524944 |
cacaaccagaacctgaaccagcac |
42524921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 615
Target Start/End: Complemental strand, 42525406 - 42525332
Alignment:
| Q |
541 |
attaattttcac-aaatgtgctaaaattggaagnnnnnnnntgatttcttaatgatcaagttatgtggttccatta |
615 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42525406 |
attaattttcaccaaatgtgctaaaattggaagaaaaaaa-tgatttcttaatgatcaagttatgtggttccatta |
42525332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 421
Target Start/End: Original strand, 29282575 - 29282723
Alignment:
| Q |
273 |
taatgtaggagtacaaacagtagagactgagcatagcacaggaaaggttattgtgacggggaccatggacggcaacaagttagtggattttgtttataga |
372 |
Q |
| |
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|||||||||||| ||||||| || ||| ||| ||||||||| || || | |||||| || || ||||| | |||||| ||||||||| ||| |||||| |
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|
| T |
29282575 |
taatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctataga |
29282674 |
T |
|
| Q |
373 |
cgaactaaaaagcaagccaaaatagttccacaaccagaacctgaaccag |
421 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| |||| ||||||||||||| |
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| T |
29282675 |
agaaccaaaaaacaagcgaaaatagttcctaaacccgaacctgaaccag |
29282723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 421
Target Start/End: Complemental strand, 6470417 - 6470269
Alignment:
| Q |
273 |
taatgtaggagtacaaacagtagagactgagcatagcacaggaaaggttattgtgacggggaccatggacggcaacaagttagtggattttgtttataga |
372 |
Q |
| |
|
|||||||||||| ||||||| || | | ||| ||||||| | || || | |||||| || || ||||| | |||||| ||||||||| ||| |||| | |
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| T |
6470417 |
taatgtaggagttcaaacagcagtggcagagtttagcacaaggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctataaa |
6470318 |
T |
|
| Q |
373 |
cgaactaaaaagcaagccaaaatagttccacaaccagaacctgaaccag |
421 |
Q |
| |
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||| ||||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
6470317 |
aaaaccaaaaaacaagcaaaaatagttcctaaaccagaacctgaaccag |
6470269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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