View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L4_35 (Length: 633)
Name: R108-L4_35
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-L4_35 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 332983 - 332539
Alignment:
| Q |
1 |
aaaagtacatcaaagtgatgaactaatgaaaattggaatggaacaagaggattgccccaaggtttctgacccaagattttcaaaatgtggattagcactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
332983 |
aaaagtacatcaaagtgatgaactaatgaaaattggaatggaacaagaggattgcaaaaaagtttctgacccaagattttcaaaatgtggattagcactt |
332884 |
T |
|
| Q |
101 |
aaaggatttccaagtgaaatttatgatgtggaatgggatgtgatcatggtggatgcaccaacggggtacttcgatggcgcgccggggaggatgagtgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
332883 |
aaaggatttccaagtgaaatttatgatgtggaatgggatgtgatcatggtggatgcaccaacggggtacttcgatggcgcgccggggaggatgagtgcta |
332784 |
T |
|
| Q |
201 |
tttatacagctggtttgattgctaggaatagagaaaatggtgatactgatgtgtttgttcatgatgttggtaggaaagttgaggatccattttcaaaggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
332783 |
tttatacagctggtttgattgctaggaatagagaaaatggtgatactgatgtgtttgttcatgatgttgataggaaagttgaggatcaattttcaaaggc |
332684 |
T |
|
| Q |
301 |
ttttctttgtgaaggttatttgagggaacaagaaggaaggattangcacttccatataccnagtcntagggctcgcttgggtagaccccattgtccntga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||||| ||||||| ||| |
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| T |
332683 |
ttttctttgtgaaggttatttgagggaacaagaaggaaggattaggcacttcaatataccaagtcatagggctcgtttgggtagaccttattgtccatga |
332584 |
T |
|
| Q |
401 |
aattgattttggatcaaatctcnttcaaaccattatgccaattatta |
447 |
Q |
| |
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|||||||||||||||| ||||| |||||| ||||||| ||||||||| |
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|
| T |
332583 |
aattgattttggatcagatctcattcaaa-cattatg-caattatta |
332539 |
T |
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