View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-L4_6 (Length: 902)
Name: R108-L4_6
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] R108-L4_6 |
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[»] chr8 (6 HSPs) |
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[»] scaffold0069 (1 HSPs) |
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[»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-145; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 242 - 559
Target Start/End: Complemental strand, 24929111 - 24928789
Alignment:
Q |
242 |
acaactaacacacccttagggaacaaatcatggattatctgcaacaaatcaattcaatcattacaagtatacttacccaatcgagtagcaccaacccaat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
24929111 |
acaactaacacacccttagggaacaaatcatggattatctgcaacaaatcaattcaatcattacaagtatacttacccaatcgagtagcaccaacccaat |
24929012 |
T |
|
Q |
342 |
tcctatgcttggggtatgaaccgagtacaccattatgtactgaacaagctcttcgaaatatgattaaagtaaccgagagtgatttggatgattncattga |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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T |
24929011 |
tcctatgcttggggtatgaaccgagtacaccattatgtactgaacaagctcttcgaaatatgattaaagtaaccgagagtgatttggatgacttcattga |
24928912 |
T |
|
Q |
442 |
gtttacgagagtatatggagatcaagagccatgctctt--------atatcctgggtgggagcttaacgaaaaattcgaacttaggaagacagcaggnaa |
533 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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T |
24928911 |
gtttacgagagtatatggagatcaagag-catgctcttcttttgagatat-ctgggtgggagcttaacgaaaaattcgaacttaggaagacagcagg-aa |
24928815 |
T |
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Q |
534 |
acctctcaagccatagctttggagga |
559 |
Q |
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||||||||||| |||||||||||||| |
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T |
24928814 |
acctctcaagctatagctttggagga |
24928789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 24928790 - 24928647
Alignment:
Q |
622 |
gatgttgaaggtgatgaggaagaaaaacaccattacctacctgtagtaactcatctattagaacaagatccttggttctttttcttttatagtgtgtttg |
721 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
24928790 |
gatgttgaaggtgatgaggaagaaaaacaccattacctacctgtagtaactcatctattagaacaagatccttggttctttttcttttatagtgtgtttg |
24928691 |
T |
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Q |
722 |
gttggaaggaaagttgtcaaga--gagangtcaaaaatatatta |
763 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||| |
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T |
24928690 |
gttggaaggaaagttgtcaagagagagatgtcaaaaatatatta |
24928647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 24929351 - 24929240
Alignment:
Q |
14 |
attaattcatatatgaaatccttttnnnnnnnnttatatgactaagataatcaagttgtgtattagttttttaatataaggatatttgagtcttttcaa- |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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T |
24929351 |
attaattcatatatgaaatccttttaaaaaaaattatatgactaagataatcaagttgtatattagttttttaatataaggatatttgagtcttttcaaa |
24929252 |
T |
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Q |
113 |
aaaattgttgca |
124 |
Q |
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|
|||||||||||| |
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|
T |
24929251 |
aaaattgttgca |
24929240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 762 - 858
Target Start/End: Complemental strand, 24346218 - 24346122
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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T |
24346218 |
tagatttgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgcccctacaat |
24346122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 762 - 858
Target Start/End: Complemental strand, 28255224 - 28255128
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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T |
28255224 |
tagatttgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgcccctacaat |
28255128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 762 - 858
Target Start/End: Original strand, 43884984 - 43885080
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
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|||||||||||||||||||||||||| ||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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T |
43884984 |
tagatttgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgcccctacaat |
43885080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 752 - 846
Target Start/End: Complemental strand, 50675685 - 50675591
Alignment:
Q |
752 |
aaaaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaaga |
846 |
Q |
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||||||| | ||||||||||||||||||| |||||||||| | | ||| |||||| |||| |||||| ||||||||||||||||||||||||||| |
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T |
50675685 |
aaaaataaaatagatttgatgtgttgtttagtataaaagagagaagagagaaatagaagatagagaaatgttgattatttataaaagtactaaga |
50675591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 762 - 843
Target Start/End: Original strand, 37516067 - 37516148
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
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|||||||||||| |||||| |||||||||| ||| ||| |||||| |||||||| ||||||||||||||||||||| ||||| |
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T |
37516067 |
tagatttgatgtattgttttgtataaaagaaatatgagagaaatagaagagagaaaagtgttgattatttataaaattacta |
37516148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 762 - 843
Target Start/End: Original strand, 39128147 - 39128228
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
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|||||||||||| |||||||||| || ||| | | ||| |||||| ||||||||||| |||||||||| ||||||||||||| |
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|
T |
39128147 |
tagatttgatgtattgtttggtaaaagagagagatgagagaaatagaagagagagaaatgttgattatatataaaagtacta |
39128228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 762 - 837
Target Start/End: Complemental strand, 52796792 - 52796717
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaa |
837 |
Q |
|
|
|||||||||||| ||||||| ||||| ||| | ||||| |||| | ||||||||||| |||||||||||||||||| |
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T |
52796792 |
tagatttgatgtcttgtttgttataagagagagacgagagaaaaagaagagagagaaatgttgattatttataaaa |
52796717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 762 - 858
Target Start/End: Complemental strand, 52099798 - 52099702
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
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||||||||||| |||||||| ||||| ||| | | ||| |||||| |||| | | ||||||| ||||||||||||||||| |||| |||||||||| |
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T |
52099798 |
tagatttgatgagttgtttgttataagagagagatgagagaaatagaagaaaaataagtgttaattatttataaaagtaccaagatgcccctacaat |
52099702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 754 - 833
Target Start/End: Original strand, 44430092 - 44430170
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttat |
833 |
Q |
|
|
||||||| |||||||||||| ||||||||| ||| ||| ||| ||| |||||| |||| |||||| |||||||||||||| |
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|
T |
44430092 |
aaatatagtagatttgatgtattgtttggt-taagagagatatgagagaaatagaagaaagagaaatgttgattatttat |
44430170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 808 - 858
Target Start/End: Complemental strand, 44384489 - 44384439
Alignment:
Q |
808 |
aagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
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||||||||||| ||||||||||||||||||||| ||||| ||| ||||||| |
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T |
44384489 |
aagagagagaaatgttgattatttataaaagtattaagatacctctacaat |
44384439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 841
Target Start/End: Original strand, 37324905 - 37324944
Alignment:
Q |
802 |
aaataaaagagagagaagtgttgattatttataaaagtac |
841 |
Q |
|
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||||| |||||||||||||||||||||||| ||||||||| |
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T |
37324905 |
aaatagaagagagagaagtgttgattatttttaaaagtac |
37324944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 791
Target Start/End: Complemental strand, 44385308 - 44385279
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaaga |
791 |
Q |
|
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|||||||||||||||||||||||||||||| |
|
|
T |
44385308 |
tagatttgatgtgttgtttggtataaaaga |
44385279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 764 - 902
Target Start/End: Complemental strand, 20812636 - 20812501
Alignment:
Q |
764 |
gatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaatnnnnn |
863 |
Q |
|
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|||||||||||||||||||| ||| ||| | | ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
T |
20812636 |
gatttgatgtgttgtttggtgtaagagagagatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatgcccctacaat---aa |
20812540 |
T |
|
Q |
864 |
nnnnntatctattaaaattatttaatcttttattcaaat |
902 |
Q |
|
|
|||| ||||||||||||||||||||||||||||| |
|
|
T |
20812539 |
aaagatatccattaaaattatttaatcttttattcaaat |
20812501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 754 - 843
Target Start/End: Complemental strand, 2116568 - 2116479
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
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||||||| |||||||||||||||||||| ||||| ||| | | ||| |||||| |||||||||||||||||||||||||||||||||||| |
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T |
2116568 |
aaatatagtagatttgatgtgttgtttgttataagagagagatgagagaaatagaagagagagaagtgttgattatttataaaagtacta |
2116479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 762 - 853
Target Start/End: Original strand, 31666247 - 31666338
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccct |
853 |
Q |
|
|
|||||||||||| ||||||||||||||||| | | ||| |||||| |||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
T |
31666247 |
tagatttgatgtattgtttggtataaaagaaagatgagagaaatagaagagagagaagtgttgattatttataaaattactatgatacccct |
31666338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 811 - 858
Target Start/End: Complemental strand, 31251900 - 31251853
Alignment:
Q |
811 |
agagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
T |
31251900 |
agagagaagtgttgattatttataaaagtactaagatgcccctacaat |
31251853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 841
Target Start/End: Complemental strand, 38783716 - 38783629
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtac |
841 |
Q |
|
|
||||||| ||||||||||| ||||||||||||| ||| | || | |||||| | ||||||||||||||||||| | ||||||||| |
|
|
T |
38783716 |
aaatatagtagatttgatgaattgtttggtataagagaaagacaaaagaaatagagaagagagaagtgttgattatatctaaaagtac |
38783629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 837
Target Start/End: Original strand, 27631579 - 27631652
Alignment:
Q |
763 |
agatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaa |
837 |
Q |
|
|
||||||||||| ||||||||||||||||| | | ||| |||||| |||||| |||| |||| ||||||| ||||| |
|
|
T |
27631579 |
agatttgatgtattgtttggtataaaagaaagaagagagaaatagaagagaaagaaatgtt-attatttttaaaa |
27631652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 762 - 856
Target Start/End: Original strand, 45708016 - 45708110
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctaca |
856 |
Q |
|
|
||||| |||||||||||||||||||| ||| | | ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
T |
45708016 |
tagatctgatgtgttgtttggtataagagagagatgagagaaatagaagagagagaagtgttgattatttataaaagtactaagatacccctaca |
45708110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 762 - 858
Target Start/End: Complemental strand, 10616261 - 10616165
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
|
|||||||||||||||||||| ||||| ||| | | ||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
T |
10616261 |
tagatttgatgtgttgtttgttataagagagagatgagagaaatagaagagagtgaagtgttgattatttataaaagtactaagatgcccctacaat |
10616165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 846
Target Start/End: Complemental strand, 11240695 - 11240605
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaaga |
846 |
Q |
|
|
||||||| ||||| |||||||||||||| ||||| ||| | | ||| |||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
T |
11240695 |
aaatatagtagatatgatgtgttgtttgttataagagagagatgagagaaatagaagagaga--agtgttgattatttataaaagtattaaga |
11240605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 762 - 841
Target Start/End: Original strand, 42596363 - 42596442
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtac |
841 |
Q |
|
|
||||||||| |||||||||| ||||||||| | | | | |||||| |||||| ||||||||| ||||| ||||||||||| |
|
|
T |
42596363 |
tagatttgaggtgttgtttgttataaaagaaagatgggagaaatagaagagaaagaagtgttaattatatataaaagtac |
42596442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 858
Target Start/End: Complemental strand, 41122771 - 41122677
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
|
|||||||| ||| ||||||||||||| ||| || ||| |||||| ||||||||||||||||| | |||| ||||| |||||| ||||||||||| |
|
|
T |
41122771 |
tagatttgttgtattgtttggtataagagagat--gagagaaatagaagagagagaagtgttggtcatttgtaaaactactaaattacccctacaat |
41122677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 843
Target Start/End: Complemental strand, 52860623 - 52860534
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
|
||||||| ||||||||||| |||||||||||||||||| | | ||| ||||| | ||||||||||||| |||| | ||||||||||| |
|
|
T |
52860623 |
aaatatagtagatttgatgggttgtttggtataaaagagaaatgagataaatagagaagagagaagtgttttttatatttaaaagtacta |
52860534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 837
Target Start/End: Complemental strand, 50366246 - 50366171
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaa |
837 |
Q |
|
|
|||||||||||| |||||||| || | ||||| | ||| ||||| |||||| ||||||||||||| ||||||||| |
|
|
T |
50366246 |
tagatttgatgtattgtttggaatgagagatagatgagagaaattgaagagaaagaagtgttgattgtttataaaa |
50366171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 830
Target Start/End: Complemental strand, 14591525 - 14591459
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatt |
830 |
Q |
|
|
|||||||||||| ||||||| ||||||||| ||| || |||||| | |||||||||||||||||||| |
|
|
T |
14591525 |
tagatttgatgtattgtttgatataaaagagatatgaaagaaatata--agagagaagtgttgattatt |
14591459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 765 - 902
Target Start/End: Original strand, 36038 - 36172
Alignment:
Q |
765 |
atttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaatnnnnnn |
864 |
Q |
|
|
||||||||||||||||||||||| ||| | | ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
T |
36038 |
atttgatgtgttgtttggtataagagagagatgagataaatagaagagagagaagtgttgattatttataaaagtactaagatgcccctacaat---aaa |
36134 |
T |
|
Q |
865 |
nnnntatctattaaaattatttaatcttttattcaaat |
902 |
Q |
|
|
| || ||||||||||||||||||||||||||||| |
|
|
T |
36135 |
aaaatgtcaattaaaattatttaatcttttattcaaat |
36172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 754 - 858
Target Start/End: Complemental strand, 39843604 - 39843500
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccct |
853 |
Q |
|
|
||||||| |||||||||||||||||||| ||||| ||| | | | | |||||| |||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
T |
39843604 |
aaatatagtagatttgatgtgttgtttgttataagagagagatgggagaaatagaagagagataagtgttgattatttataaaagtactaagatgcccct |
39843505 |
T |
|
Q |
854 |
acaat |
858 |
Q |
|
|
||||| |
|
|
T |
39843504 |
acaat |
39843500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 762 - 853
Target Start/End: Complemental strand, 53921191 - 53921100
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccct |
853 |
Q |
|
|
|||||||||||||||||||| | ||||||| | | || |||||| |||||||||||||||||||||| | ||||| |||||| | |||||| |
|
|
T |
53921191 |
tagatttgatgtgttgtttgatttaaaagagagagaagagaaatagaagagagagaagtgttgattatatttaaaaatactaaaatacccct |
53921100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 762 - 858
Target Start/End: Original strand, 42857607 - 42857701
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
|
|||||||||||| ||||||||| ||| ||| | | ||| |||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||| |
|
|
T |
42857607 |
tagatttgatgtattgtttggtgtaagagagagatgagagaaatagaagag--agaagtgttgattatttataaaactactaaattacccctacaat |
42857701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 843
Target Start/End: Complemental strand, 11671871 - 11671790
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
|
||||||||||| ||||||||||||||||| | | ||| |||||| | |||||||||||||| |||| | ||||||||||| |
|
|
T |
11671871 |
tagatttgatgaattgtttggtataaaagagaaatgagagaaatagagaagagagaagtgttgtttatatttaaaagtacta |
11671790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 801 - 837
Target Start/End: Complemental strand, 47499488 - 47499452
Alignment:
Q |
801 |
gaaataaaagagagagaagtgttgattatttataaaa |
837 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||| |
|
|
T |
47499488 |
gaaataaaagagagagaagtgttgattatatataaaa |
47499452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 841
Target Start/End: Complemental strand, 52399325 - 52399246
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtac |
841 |
Q |
|
|
|||||||||||| |||||||||||| ||| | | || |||||||| ||||||||||||||||| || |||||||||| |
|
|
T |
52399325 |
tagatttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtgttgattgttaataaaagtac |
52399246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 754 - 843
Target Start/End: Complemental strand, 45657757 - 45657670
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
|
||||||| |||||||||||||||||||| ||||| ||| || ||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
T |
45657757 |
aaatatagtagatttgatgtgttgtttgttataagagagat--gagagaaatagaagagagagaagtgttgattatttataaaagtacta |
45657670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 754 - 841
Target Start/End: Complemental strand, 16871550 - 16871463
Alignment:
Q |
754 |
aaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtac |
841 |
Q |
|
|
||||||| ||||||||| |||||||||| ||||| ||| | | ||| |||||| |||||| ||||||||| ||||| ||||||||||| |
|
|
T |
16871550 |
aaatatagtagatttgaggtgttgtttgttataagagaaagatgagagaaatagaagagaaagaagtgttaattatatataaaagtac |
16871463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 857
Target Start/End: Complemental strand, 34996798 - 34996703
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaa |
857 |
Q |
|
|
|||||||||||| ||||||||||||| ||| | | || |||||| | ||||||||||||| | |||| |||||| ||||| |||||||||||| |
|
|
T |
34996798 |
tagatttgatgtattgtttggtataagagagaaagaagagaaatagagaagagagaagtgtttaatattattaaaaggactaaaacacccctacaa |
34996703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 33249474 - 33249535
Alignment:
Q |
55 |
ctaagataatcaagttgtgtattagttt-tttaatataaggatatttgagtcttttcaaaaa |
115 |
Q |
|
|
|||||| ||| || |||| ||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
T |
33249474 |
ctaagaaaataaaattgtatattagtttgtttaatataagaatattttagtcttttcaaaaa |
33249535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 762 - 858
Target Start/End: Complemental strand, 29993223 - 29993127
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
|
||||||||||||||||||||| ||||||| | | || || ||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
T |
29993223 |
tagatttgatgtgttgtttggcataaaagggagaaaagagagatagaagagagagaagtgttgattatttataaaagtacaaagatacccctacaat |
29993127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 762 - 853
Target Start/End: Complemental strand, 12464282 - 12464191
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccct |
853 |
Q |
|
|
|||||||||||||||||||||| ||||||| | | || |||||| || ||||||||||||||||||| | ||||| |||||| | |||||| |
|
|
T |
12464282 |
tagatttgatgtgttgtttggtttaaaagagagagaagagaaatagaaaagagagaagtgttgattatgtttaaaaatactaaaatacccct |
12464191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 762 - 843
Target Start/End: Complemental strand, 24905459 - 24905380
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
|
|||||||||||| |||||||||| || ||| | | ||| ||||||||||||||| |||||||||||| ||||||||||||| |
|
|
T |
24905459 |
tagatttgatgtattgtttggtaaaagagagagaagagagaaataaaagagaga--agtgttgattatatataaaagtacta |
24905380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 763 - 831
Target Start/End: Original strand, 6377488 - 6377556
Alignment:
Q |
763 |
agatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattattt |
831 |
Q |
|
|
||||||||||||||||||||||||| ||| | | ||| ||||| |||||| ||||||||||||||||| |
|
|
T |
6377488 |
agatttgatgtgttgtttggtataagagaaaaaagagaaaaatagaagagaaagaagtgttgattattt |
6377556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 762 - 858
Target Start/End: Original strand, 37472294 - 37472388
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
|
||||||||||| |||||||| ||||||||| || ||| |||||| |||||| ||||||||||||||||||||||| ||| |||| ||||||||||| |
|
|
T |
37472294 |
tagatttgatgggttgtttgttataaaagagat--gagagaaatagaagagaaagaagtgttgattatttataaaaataccaagatacccctacaat |
37472388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 752 - 843
Target Start/End: Original strand, 11738615 - 11738706
Alignment:
Q |
752 |
aaaaatatattagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
|
||||||| | ||||||||||| ||||||||||||||||| | | ||| |||||| | |||||||||||||| |||| | ||||||||||| |
|
|
T |
11738615 |
aaaaatagagtagatttgatggattgtttggtataaaagagaaatgagagaaatagagaagagagaagtgttgtttatatttaaaagtacta |
11738706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 841
Target Start/End: Original strand, 3462680 - 3462759
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtac |
841 |
Q |
|
|
|||||||||||| |||||||||||| ||| | | || |||||||| ||||||||||||||||| || |||||||||| |
|
|
T |
3462680 |
tagatttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtgttgattgttaataaaagtac |
3462759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 843
Target Start/End: Original strand, 28634546 - 28634588
Alignment:
Q |
801 |
gaaataaaagagagagaagtgttgattatttataaaagtacta |
843 |
Q |
|
|
|||||| |||||||||||||||||||||| | ||||||||||| |
|
|
T |
28634546 |
gaaatagaagagagagaagtgttgattatatctaaaagtacta |
28634588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 762 - 858
Target Start/End: Original strand, 251872 - 251968
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacacccctacaat |
858 |
Q |
|
|
|||||||||| ||||||||| ||||| ||| | | ||| |||||| |||||| | |||||||||||||||||||||||| |||| |||||||||| |
|
|
T |
251872 |
tagatttgatttgttgtttgttataagagagagatgagagaaatagaagagaaaaaagtgttgattatttataaaagtatcaagatgcccctacaat |
251968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 762 - 846
Target Start/End: Original strand, 5045499 - 5045583
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaaga |
846 |
Q |
|
|
||||||| ||| ||||||| ||||| ||| | | ||| |||||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
T |
5045499 |
tagattttatggattgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtaccaaga |
5045583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 762 - 854
Target Start/End: Complemental strand, 7214601 - 7214509
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaagacaccccta |
854 |
Q |
|
|
|||||||||| |||||||||||||| ||| ||| || ||||| || |||| |||| |||||||||||| ||||||||| || | ||||||| |
|
|
T |
7214601 |
tagatttgataagttgtttggtataagagagataaaagagaaatgaaggagaaagaaatgttgattatttttaaaagtacaaatataccccta |
7214509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 762 - 846
Target Start/End: Original strand, 46599 - 46683
Alignment:
Q |
762 |
tagatttgatgtgttgtttggtataaaagatatacgagggaaataaaagagagagaagtgttgattatttataaaagtactaaga |
846 |
Q |
|
|
||||||| ||| ||||||| ||||| ||| | | ||| |||||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
T |
46599 |
tagattttatggattgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtaccaaga |
46683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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