View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk100-16 (Length: 633)
Name: R108-tnk100-16
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk100-16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 96 - 633
Target Start/End: Original strand, 42399912 - 42400449
Alignment:
| Q |
96 |
aattatggaaggacagaatgtcacattacaagcatatcactcctattgctcaaggaagatatagaaacattattgatatgaatgcctaccttggtggatt |
195 |
Q |
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| T |
42399912 |
aattatggaaggacagaatgtcacattacaagcatatcactcctattgctcaaggaagatatagaaacattattgatatgaatgcttaccttggtggatt |
42400011 |
T |
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| Q |
196 |
tgcagcagcattattaaaatttccagtttgggttatgaatgttgttccttcaaattcagctcatgatactcttggtgcaatctttgaaagaggtttcatt |
295 |
Q |
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| T |
42400012 |
tgcagcagcattattaaaatttccagtttgggttatgaatgttgttccttcaaattcagctcatgatactcttggtgcaatctttgaaagaggtttcatt |
42400111 |
T |
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| Q |
296 |
gggacttaccatgattggtgtgaagctttctcaacttaccctagaacttatgatctcatacatgcagctggtgtatttggcatatatcaggataggttgg |
395 |
Q |
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| T |
42400112 |
gggacttaccatgattggtgtgaagctttctcaacttaccctagaacttatgatctcatacatgcagctggtgtatttggcatatatcaggataggttgg |
42400211 |
T |
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| Q |
396 |
tatttccatattattatgtgtttttgactgaattaattgttatcatgtgtttttgactgaattaattgttatgtatgaaaggtgcaacattactgttata |
495 |
Q |
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| T |
42400212 |
tatttccatattattatgtgtttttgactgaattaattgttatcatgtgtttttgactgaattaattgttatgtatgaaaggtgcaacattactgttata |
42400311 |
T |
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| Q |
496 |
ctattggagatggatagaatcttgaggccagaaggtacagtggtattcagagaaggagtagagcttctcacaaagattaaaagtgttactgatgcaatga |
595 |
Q |
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| T |
42400312 |
ctattggagatggatagaatcttgaggccagaaggtacagtggtattcagagaaggagtagagcttctcacaaagattaaaagtgttactgatgcaatga |
42400411 |
T |
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| Q |
596 |
agtggaagagcaacataatggatcatgaaagtggaccc |
633 |
Q |
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| T |
42400412 |
agtggaagagcaacataatggatcatgaaagtggaccc |
42400449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 42400445 - 42400525
Alignment:
| Q |
1 |
gaccctttttcccagaaaagattcttgttgcggaaaaaacttattggactgggggagctaaagaaaatagcaactaataga |
81 |
Q |
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| T |
42400445 |
gaccctttaacccagaaaagattcttgttgcggaaaaaacttattggactgggggagctaaagaaaatagcaactaataga |
42400525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 503714 - 503625
Alignment:
| Q |
154 |
atatagaaacattattgatatgaatgcctaccttggtggatttgcagcagcattattaaaatttccagtttgggttatgaatgttgttcc |
243 |
Q |
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| T |
503714 |
atatagaaatgttatggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaatgttgttcc |
503625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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