View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk100-42 (Length: 298)
Name: R108-tnk100-42
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk100-42 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 31 - 298
Target Start/End: Complemental strand, 1230331 - 1230064
Alignment:
| Q |
31 |
attaatctcaccaaattaaagagagtatatcgtaagtatttttcttttctatatgctccattgtcatattaaatttgtttgcaaattctaactactattt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1230331 |
attaatctcaccaaattaaagagagtatatcgtaagtattttccttttctatatgctccattgtcatattaaatttgtttgcaaattctaactactattt |
1230232 |
T |
|
| Q |
131 |
aatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgtttgattcattttattgacattgaagagatacaaacaatagaaaaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1230231 |
aatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgtttgattcattttattgacattgaagagatacaaacaatagaaaaa |
1230132 |
T |
|
| Q |
231 |
cttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactcctctagaaaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1230131 |
cttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactcctctagaaaat |
1230064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 1230063 - 1230029
Alignment:
| Q |
3 |
ccactgctttttctacaaatcgaaaactattaatc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1230063 |
ccactgctttttctacaaatcgaaaactattaatc |
1230029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10976 times since January 2019
Visitors: 8059