View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk100-47 (Length: 602)
Name: R108-tnk100-47
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk100-47 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 39091074 - 39091367
Alignment:
| Q |
1 |
agcattatacaagagctttaaaagatttgctgccaaatgggcatgtcaactctattgcagcataataatagcctttgggcatgtccactagttcaatcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39091074 |
agcattatacaagagctttaaaagatttgctgccaaatgggcatgtcaactctattgcagcataataatagcctttgggcatgtccactcgttcaatcta |
39091173 |
T |
|
| Q |
101 |
gaggattcatacaaaaactattactctttctatctaaaatattgaagagtattttgcttaactgttgaaaagaatgatttactccatagttttattattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39091174 |
gaggattcatacaaaaactattactctttctatctaaaatattgaagagtattttgcttaactgttgaaaagaatgatttactccatagttttattattt |
39091273 |
T |
|
| Q |
201 |
aactaccgtgtaattgagtactagagataatatttgcagttatattactt-aaagtgttatgaaacatgatatcccatgaagaaatgagagaaa |
293 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
39091274 |
aactaccgtgtaattgagtactagagatgatatttgcagttatattacttaaaagtgttatgaaacatgatatccaatgaaggaatgagagaaa |
39091367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 463 - 602
Target Start/End: Original strand, 39090939 - 39091078
Alignment:
| Q |
463 |
aattgaaaggccccactccttcactaacttggattcttatattatggtgtttttctctaactttgattattttgtttacagaggattaccctactcctta |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39090939 |
aattgaaaggccccactccttcactaacttggattcttatattatggtgtttttctctaactttgattattttgtttacagaggattaccctactcctta |
39091038 |
T |
|
| Q |
563 |
accagattgcaatatggtacaatgtttgtgtacaaagcat |
602 |
Q |
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| T |
39091039 |
accagattgcaatatggtacaatgtttgtgtacaaagcat |
39091078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 39090858 - 39090894
Alignment:
| Q |
291 |
aaatgagtcttgagtagtggattgtcaatgtaaatgg |
327 |
Q |
| |
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| T |
39090858 |
aaatgagtcttgagtagtggattgtcaatgtaaatgg |
39090894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 35610969 - 35610928
Alignment:
| Q |
252 |
aagtgttatgaaacatgatatcccatgaagaaatgagagaaa |
293 |
Q |
| |
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|||||||| |||||||||||||| |||||| ||||||||||| |
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|
| T |
35610969 |
aagtgttaggaaacatgatatccaatgaaggaatgagagaaa |
35610928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 35130686 - 35130645
Alignment:
| Q |
252 |
aagtgttatgaaacatgatatcccatgaagaaatgagagaaa |
293 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||||||||| |
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|
| T |
35130686 |
aagtgttaggaaacatgatatccaatgaaggaatgagagaaa |
35130645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 27510480 - 27510521
Alignment:
| Q |
252 |
aagtgttatgaaacatgatatcccatgaagaaatgagagaaa |
293 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
27510480 |
aagtgttaggaaacatgatatccaatgaaggaatgagagaaa |
27510521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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