View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-10 (Length: 517)
Name: R108-tnk148-10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-10 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 86 - 426
Target Start/End: Original strand, 33718327 - 33718666
Alignment:
| Q |
86 |
gaattcttctttctctttcgtcccctttttgtggcgtttttatatatttatttatattgtggtgaccaccc-----aaccccaccaccacgagatagtgc |
180 |
Q |
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| T |
33718327 |
gaattctcctttctctttcgtcccctttttgtggcgtttttatat------ttatattgtggtgaccacccaacccaaccccaccaccacgagatagtgc |
33718420 |
T |
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| Q |
181 |
gtcatgccacacatcaaaatcctatctggtactactattacaaaaccccacgtgattaattaatccaagtttataccttttcataaaccaaaacccaacc |
280 |
Q |
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| T |
33718421 |
gtcatgccacacatcaaaatcctatctggtactactattacaaaaccccacgtgattaattaatccaagtttataccctttcaaaaaccaaaacccaacc |
33718520 |
T |
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| Q |
281 |
gtgtgggaacggtgtacacacctgcctcttacttgccacatcattcccataccgtatataaccaacgtcaaacctttgacttcatttcattttcaacgtc |
380 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718521 |
gtgtgggaacagtgtacacacctgcctcttacttgccacatcattcccataccgtatataaccaacgtcaaacctttgacttcatttcattttcaacgtc |
33718620 |
T |
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| Q |
381 |
ttctaaaccttaagcaaacgctttagacttcaacacaacaacaaca |
426 |
Q |
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| T |
33718621 |
ttctaaaccttaaacaaacgctttagacttcaacacaacaacaaca |
33718666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 33718763 - 33718852
Alignment:
| Q |
2 |
tctccggctccacctcaaccgcaaactcattaccggaatttcatctcccggattccaccatcggaagcagcagcagcatggagcgaattc |
91 |
Q |
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| T |
33718763 |
tctccggctccacctcaaccgcaaactcattaccggaatttcatctcccggattccaccatcggaagcagcagcagcatggagcgaattc |
33718852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 517
Target Start/End: Original strand, 33718720 - 33718766
Alignment:
| Q |
471 |
gatcaagaacaatccgtcattgtcaccgccctaaccaaagtcatctc |
517 |
Q |
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| T |
33718720 |
gatcaagaacaatccgtcattgtcaccgccctaaccaaagtcgtctc |
33718766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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