View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-11 (Length: 662)
Name: R108-tnk148-11
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-11 |
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| [»] scaffold1221 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: scaffold1221 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: scaffold1221
Description:
Target: scaffold1221; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 368 - 662
Target Start/End: Complemental strand, 1213 - 920
Alignment:
| Q |
368 |
aattcaaacctgaaattttattttttggtgataaattggatcttgtttcaaaatttcatccaactttctactatgatgcaggcaagtatgcatgtgttat |
467 |
Q |
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| T |
1213 |
aattcaaacctgaaatttcattttt-ggtgataaattggattttgtttcaaaatttcatacaactttctactatgatgcaagcaagtatgcatgtgttat |
1115 |
T |
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| Q |
468 |
gactgttttctttttaacagggtcttctgataaacatttcaggtgtagggaagagttggttacctttagaattttctaccagttgtctactacctaaaaa |
567 |
Q |
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| T |
1114 |
gactgttttctttttaacagggtcttctgataaacatttcaggtgtgggtaagagttggttacctttagaattttctagcaattttctactacctaaaaa |
1015 |
T |
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| Q |
568 |
tttgtcaggtactttaaggttgaactaaaaaggaaaactcacaggattactatgggatggatccaccgtaagctgcctaaatggtagatgagaac |
662 |
Q |
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| T |
1014 |
tttgtcaggtactttaaggttgaactaaaaaggaaaactcacaggattactatgtgatggatccactgtaagctgcctaaatggtagatgagaac |
920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1221; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 85 - 325
Target Start/End: Complemental strand, 914 - 674
Alignment:
| Q |
85 |
ttatgaataaggagatagaatgggatatgctgattcatgtagatgatgcaagtggcaagtccgttgctacgttcctccaaaggtaataatttatataaat |
184 |
Q |
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| T |
914 |
ttatgaataaggagttagaatgggatacgccgattcatgtagatgatgcaagtggcaagtccgttgctacgttcctccaaaggtaataatttatataaat |
815 |
T |
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| Q |
185 |
tgactgattccttttacccttatgcattcaataaatatctttgtttaacactatgagctcactatcaaagtattaagcccagaatgcaattatacagttt |
284 |
Q |
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| T |
814 |
tgactgattccttttacccttatgcattcaataaatatctttgtttaacactatgagctcactatcaaagtattaagcccagaatgcaattatacggttt |
715 |
T |
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| Q |
285 |
tgaatctaaaagtttgtttttaagaagcatcaactctttta |
325 |
Q |
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| T |
714 |
tgaatccaaaaatttgtttttaagaagcaacaactctttta |
674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 563 - 662
Target Start/End: Complemental strand, 27857199 - 27857096
Alignment:
| Q |
563 |
aaaaatttgtcaggtactttaaggttgaactaaa--aaggaaaactcacag--gattactatgggatggatccaccgtaagctgcctaaatggtagatga |
658 |
Q |
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| T |
27857199 |
aaaaatttgccaggtactttgaggttgaactaaaggaagtgaaactcacagaggattactatgtgatggatccactgaaagctgttgaaatggtagatga |
27857100 |
T |
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| Q |
659 |
gaac |
662 |
Q |
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| T |
27857099 |
gaac |
27857096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 27857069 - 27857017
Alignment:
| Q |
35 |
ttcaaggctgaccggagagttccaggatgtgaagcttcccagcgaacttctta |
87 |
Q |
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| T |
27857069 |
ttcaacgctgaccggagagttcgaggatgtgaagcttctcaacgaacttctta |
27857017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 14566621 - 14566555
Alignment:
| Q |
389 |
tttttggtgataaattggatc-----ttgtttcaaaatttcatccaactttctactatgatgcaggc |
450 |
Q |
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| T |
14566621 |
tttttggtgataaattggattgctttttgtttcaaaatttcatttaactttctattatgatgcaggc |
14566555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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