View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-13 (Length: 507)
Name: R108-tnk148-13
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-13 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 4e-98; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 220 - 507
Target Start/End: Original strand, 30993425 - 30993703
Alignment:
| Q |
220 |
tccaatcggttaagccaagttaatggtgtttggccttgaatatgagcagcaagagtcccattggacaggtactcatgtactagcaagcattccttttgat |
319 |
Q |
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| T |
30993425 |
tccaatcggttaagccaagttaatggtgtttggccttgaatatgagcagcgagagtaccattggacaggtactcatgtactagcaagcattccttttgat |
30993524 |
T |
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| Q |
320 |
gagtggttcatcgataaattgtaacaaggtttttatgtcgcatgtaatttaggaatgcggtttcattgatgaactgtttcaaattcaatatgctgtactt |
419 |
Q |
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| T |
30993525 |
gagtggttcatcgataaattgtagcatgg--tttgtgtcccgtgtaatttaggaatgcagtttcattgttgaactgt------ttcaatatggtgtactt |
30993616 |
T |
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| Q |
420 |
gtcttcagtaaagtaatggactgcaatctcacaaccattcttaagttttccaaatctaactagagtataagaacaaaataataataat |
507 |
Q |
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| T |
30993617 |
gtcttcagtaaagtaatggactctaatctcacaaccattctttagttttcctaatcaaactagagtataagagc-aaataataataat |
30993703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30993702 - 30993911
Alignment:
| Q |
1 |
ataataactatcagtcacctatatttgttctgtgtcagtcatcttcatccatctctcctttaacttcaaatgttacttatgatgacttgcaacgttaaac |
100 |
Q |
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| T |
30993702 |
ataataaccatcagtcacctgaatttgctctgtgtcagtcagcttcatcc----ctcctttaacttcaaatgttacttgtgatgacttgcaacgttaaac |
30993797 |
T |
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| Q |
101 |
aatgttgtggcagtacatgtcggtttcaaacaatttccgcatatacacgggcttaaattgtaagcattatacacacactttctcttaaacacacctagca |
200 |
Q |
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| T |
30993798 |
aatgttgtggcagtacatgtcggtttcaaacaatttccgcatatacaagggcttaaattgtaaacattatacacacactttctcttaaacacacctagca |
30993897 |
T |
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| Q |
201 |
agctacaacaattg |
214 |
Q |
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| T |
30993898 |
agctacaacaattg |
30993911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 251 - 507
Target Start/End: Original strand, 30964645 - 30964895
Alignment:
| Q |
251 |
ggccttgaatatgagcagcaagagtcccattggacaggtactcatgtactagcaagcattccttttgatgagtggttcatcgataaattgtaacaaggtt |
350 |
Q |
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| T |
30964645 |
ggccttgaatatgagcagcaagagtcccattggacacgtattcttgtactagaatggattccttttgatgagtggcataaccataaatcgtgactaggtt |
30964744 |
T |
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| Q |
351 |
tttatgtcgcatgtaatttaggaatgcggtttcattgatgaactgtttcaaattcaatatgctgtacttgtcttcagtaaagtaatggactgcaatctca |
450 |
Q |
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| T |
30964745 |
tttgtatggcatgtaatttaggaatacagtttcattgatgaattgt------ttcaatatgttgtacttgtcttcattgaagcattggactgcaatctca |
30964838 |
T |
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| Q |
451 |
caaccattcttaagttttccaaatctaactagagtataagaacaaaataataataat |
507 |
Q |
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| T |
30964839 |
cgaccattcttaagttttcctaatcaaagtagattataagaacaaaatagtaataat |
30964895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 251 - 475
Target Start/End: Original strand, 30934468 - 30934686
Alignment:
| Q |
251 |
ggccttgaatatgagcagcaagagtcccattggacaggtactcatgtactagcaagcattccttttgatgagtggttcatcgataaattgtaacaaggtt |
350 |
Q |
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| T |
30934468 |
ggccttgaatatgagcagcaagagtcccgttggacaggtattcatgtactatcatggattccttttgatgagtggcataaccataaatcgtaactaggtt |
30934567 |
T |
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| Q |
351 |
tttatgtcgcatgtaatttaggaatgcggtttcattgatgaactgtttcaaattcaatatgctgtacttgtcttcagtaaagtaatggactgcaatctca |
450 |
Q |
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| T |
30934568 |
tttgtgtggcatgtaatttaggaatgcagcttcattggtgaactgt------ttcaatatgtggtacttgttttcattaaagcattggactgtaatctca |
30934661 |
T |
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| Q |
451 |
caaccattcttaagttttccaaatc |
475 |
Q |
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| T |
30934662 |
caaccattcttaagttttcctaatc |
30934686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 30934816 - 30934975
Alignment:
| Q |
55 |
ctcctttaacttcaaatgttacttatgatgacttgcaacgttaaacaatgttgtggcagtacatgtcggtttcaaacaatttccgcatatacacgggctt |
154 |
Q |
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| T |
30934816 |
ctccgttaacttcaaatgttacttatgatgactagagacatgaaacgatgatgtgacagtacacatgggttacaaatagcttctacatatactagggatt |
30934915 |
T |
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| Q |
155 |
aaattgtaagcattatacacacactttctcttaaacacacctagcaagctacaacaattg |
214 |
Q |
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| T |
30934916 |
atattgtagacattatacacatacttgctcataaacacgcctaccaagctacaacaattg |
30934975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 30965019 - 30965179
Alignment:
| Q |
50 |
catctctcctttaacttcaaatgttacttatgatgacttgcaacgttaaacaatgttgtggcagtacatgtcggtttcaaacaattt-ccgcatatacac |
148 |
Q |
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| T |
30965019 |
catccctcctttaacttcaaacgttacttatgatgactttcgatgttaaacgatgatgtggcagtacacgcaagtatcaaataatttcccacatatataa |
30965118 |
T |
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| Q |
149 |
gggcttaaattgtaagcattatacacacactttctcttaaacacacctagcaagctacaac |
209 |
Q |
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| T |
30965119 |
gggataatatcgtaaacatcatgcacatattttctctaaaacacgcctaccaagctacaac |
30965179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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