View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk148-15 (Length: 1210)
Name: R108-tnk148-15
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 762; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 1 - 892
Target Start/End: Complemental strand, 41891315 - 41890428
Alignment:
| Q |
1 |
aaaccatcanngatagcaatgtgaaatggtgctatttgtgtctatttcgtcaatgcaatatgttatttcccagttgcaatcattggatattgnacttttg |
100 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41891315 |
aaaccatcaaagatagcaatgtggaatggtgctatttgtgcctatttcatcaatgcaatatgttatttcccagttgcaatcattggatattggacttttg |
41891216 |
T |
|
| Q |
101 |
gacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgatggtattcatccatgttgttggtagcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41891215 |
gacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgatggtattcatccatgttgttggtagcta |
41891116 |
T |
|
| Q |
201 |
tcaggtatcanctattaatgtaaaaccaattcctcaaatttgtgaaaatagtgtcaaatatttttgtgcaaatattttttcactgtcttttgtacaaata |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41891115 |
tcaggtatcaactattaatgtaaaaccaattcctcaaatttgtgaaaatagtgtcaaatatttttgtgcaaatattttttcactgtcttttgtacaaata |
41891016 |
T |
|
| Q |
301 |
tttgaaaatgtcttaacgnnnnnnngtgattgaaagtgaaaacaaaagtgaaaatagaaaaagttttcagaaactaaacagatcttaaattttcttttct |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41891015 |
tttgaaaatgtcttaacgtttttttgtgattgaaagtgaaaacaaaagtgaaaatagaaaaagttttcagaaactaaacagatcttaaattttcttttct |
41890916 |
T |
|
| Q |
401 |
gatcggtggggtaaaaatatattataggtttatgcaatgcctgtttttgatttgattgagaggatgatgatgcgaagattg-acttccctcccgggtgta |
499 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
41890915 |
gatcggtgaggtaaaaatatattataggtttatgcaatgcctgtttttgatttgattgagaggatgatgatgcgaagattgaacttccctccc-ggtgta |
41890817 |
T |
|
| Q |
500 |
gcgcttagacttgtagctcgatctgcttatgtaggtaagatgtcaaacctcgaggcggaaactaattttctgcagtatagatagaagaattattttcctc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41890816 |
gcgcttagacttgtagctcgatctgcttatgtaggtaagatgtcaaaactcgaggc-gaaactaattttctgcagtatagatagaagaattatttt-ctt |
41890719 |
T |
|
| Q |
600 |
catgataggtctttgttgaaatggttcagcctttttacattattc-ttggagtcacttttcccattctttggtgatcttcttggattctttggtggattt |
698 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890718 |
catgataggtctttgttgaaacgtttcagc--ttttacattattctttggagtcactttt-ccattctttggtgatcttcttggattctttggtggattt |
41890622 |
T |
|
| Q |
699 |
ggttttgctcccacttcatattttgtaaggctctcttgtcctctctattcttatgtcaaattgtcaatttaagatgaattgattctgaaactaaaaagtc |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41890621 |
ggttttgctcccacttcatattttgtaaggctctcttgtcctctctattcttatgtcaaattgtcaatttaaaatgaattgattctgaaactaaaaagtc |
41890522 |
T |
|
| Q |
799 |
aattattggcttgttaattgtttcagcttcccagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattg |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890521 |
aattattggcttgttaattgtttcagcttcctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattg |
41890428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 887 - 1206
Target Start/End: Complemental strand, 41891639 - 41891314
Alignment:
| Q |
887 |
caattgtatcggtactaatgcgccgaacccaatcagaactctacagttaagcgtgtgtaagctagagtattacaagacctcataaaaaattcatat-caa |
985 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41891639 |
caattgtatcggtactaatgtgccgaacccaatcagaactctacagttaagcgtgtgtaagctagagtattacaagacctcataaaaaattcatattcaa |
41891540 |
T |
|
| Q |
986 |
ctaaagcct-gatat-gtggtgttttgac-gcagntattcaactatagcatgggtggcttgcttacctagaggccggattgacaatgt-agctangcaaa |
1081 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
41891539 |
ctaaagccttgatattgtggtgttttgagtgcagttattcaactatagcatgggtggcttgcttacctagaggccggattgacaatgttagctatgcata |
41891440 |
T |
|
| Q |
1082 |
caanccaatcagcaaaattgatttattgttcagagtcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaa |
1181 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41891439 |
caaaccaatcagcaaaactgatttattgttcagagtcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaa |
41891340 |
T |
|
| Q |
1182 |
gctac-aatccatcaacacctgaaaa |
1206 |
Q |
| |
|
||||| | |||||||||||||||||| |
|
|
| T |
41891339 |
gctacgattccatcaacacctgaaaa |
41891314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 1013 - 1203
Target Start/End: Complemental strand, 41897085 - 41896893
Alignment:
| Q |
1013 |
gcagntattcaactatagcatgggtggcttgcttacctagaggccggattgacaatgt-agctangcaaacaanccaatcagcaaaattgatttattgtt |
1111 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||| | ||| ||| |||| | ||||||||||| |||||||||||| |
|
|
| T |
41897085 |
gcagctattcaactatagcatgggtggcatgcttatctagaggtcggattgacaatgttaactatgcatacaagcaaatcagcaaaactgatttattgtt |
41896986 |
T |
|
| Q |
1112 |
cagagtcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaagctacaa-tccatcaacacctga |
1203 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| ||||||| |||||||| || |||||||| ||||||| ||||||||||||||| |
|
|
| T |
41896985 |
tagagtcttcagtgcacttggtcaaatctcatttgcattttctggccaagcagtgacactagaaattcaggctacaattccatcaacacctga |
41896893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 41896891 - 41896685
Alignment:
| Q |
1 |
aaaccatcanngatagcaatgtgaaatggtgctatttgtgtctatttcgtcaatgcaatatgttatttcccagttgcaatcattggatattgnacttttg |
100 |
Q |
| |
|
||||| ||| |||| ||||||| || ||||||||||||| |||||| ||||||||||||| |||||||| ||||||| | | |||||||| |||||| |
|
|
| T |
41896891 |
aaaccctcaaagataccaatgtggaaaggtgctatttgtgcctatttaatcaatgcaatatgctatttccctgttgcaaccttaggatattgggcttttg |
41896792 |
T |
|
| Q |
101 |
gacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgatggtattcatccatgttgttggtagcta |
200 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
41896791 |
gacaagatgttgatgataacatacttatgtcacttgaaagaccttcatggcttgttgcttctgctaatttgatggtattcatcaatgttcttggtagcta |
41896692 |
T |
|
| Q |
201 |
tcaggta |
207 |
Q |
| |
|
|||||| |
|
|
| T |
41896691 |
ccaggta |
41896685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 663 - 892
Target Start/End: Complemental strand, 41896269 - 41896030
Alignment:
| Q |
663 |
ttctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaaggctctcttgtcc--------tctctattcttatgt |
754 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
41896269 |
ttctttggagatcttcttgggttctttggtggatttggttttgctcccacgtcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgt |
41896170 |
T |
|
| Q |
755 |
caaattgtcaa--tttaagatgaattgattctgaaactaaaaagtcaattattggcttgttaattgtttcagcttcccagcataatgtggatgataatca |
852 |
Q |
| |
|
||||||||||| ||| | ||||||| ||| | ||| |||| | ||||||| ||||| |||| ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
41896169 |
caaattgtcaaatttttaaatgaattaattataaaatcaaaagatgaattattttcttgtgaattatttcagcttcctagtataatgtggttgataatca |
41896070 |
T |
|
| Q |
853 |
agaaaccaaagaaattcagcatcaactggttcatcaattg |
892 |
Q |
| |
|
|||| |||| || |||||| ||||| |||||||||||||| |
|
|
| T |
41896069 |
agaagccaaggagattcagtatcaattggttcatcaattg |
41896030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 384 - 546
Target Start/End: Complemental strand, 41896598 - 41896436
Alignment:
| Q |
384 |
cttaaattttcttttctgatcggtggggtaaaaatatattataggtttatgcaatgcctgtttttgatttgattgagaggatgatgatgcgaagattga- |
482 |
Q |
| |
|
||||||||||||||| |||| ||| | ||||||| |||||||||||||| ||||||||||| || ||||||||| ||| |||| | ||| |||||| |
|
|
| T |
41896598 |
cttaaattttcttttttgattaatggcgcgaaaatatgttataggtttatgccatgcctgttttcgacttgattgaggggacgatggttcgacgattgaa |
41896499 |
T |
|
| Q |
483 |
cttccctcccgggtgtagcgcttagacttgtagctcgatctgcttatgtaggtaagatgtcaaa |
546 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
41896498 |
cttccctcctag-tgtagcgcttagacttgtagctcgatccgcctatgtaggtaagatggcaaa |
41896436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 22550619 - 22550821
Alignment:
| Q |
1 |
aaaccatcanngatagcaatgtgaaatggtgctatttgtgtctatttcgtcaatgcaatatgttatttcccagttgcaatcattggatattgnacttttg |
100 |
Q |
| |
|
||||||||| ||| ||||||| || ||||||||| ||| |||| || | ||||||||||||||||||||||||||| | ||||||||||| | |||| |
|
|
| T |
22550619 |
aaaccatcaaaaataccaatgtggaaaggtgctattggtgcctatgtcataaatgcaatatgttatttcccagttgcacttattggatattgggcatttg |
22550718 |
T |
|
| Q |
101 |
gacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgatggtattcatccatgttgttggtagcta |
200 |
Q |
| |
|
|| ||||||| | |||||| | || ||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
22550719 |
gaagagatgttgaagataatgtgcttatgtcacttgaaagaccagcttggctcattgcctctgctaacttgatggtattcattcatgttgttggaagtta |
22550818 |
T |
|
| Q |
201 |
tca |
203 |
Q |
| |
|
||| |
|
|
| T |
22550819 |
tca |
22550821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 1117 - 1203
Target Start/End: Original strand, 22550530 - 22550617
Alignment:
| Q |
1117 |
tcttcaatgcacttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaagctacaa-tccatcaacacctga |
1203 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
22550530 |
tcttcaatgcacttggtcaaatttcatttgcatttgctggccatgcagtagcacttgaaattcaagcaacaattccatcaacacctga |
22550617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 657 - 727
Target Start/End: Original strand, 22551904 - 22551974
Alignment:
| Q |
657 |
ttcccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
727 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22551904 |
ttccctttctttggcgatcttcttggcttctttggtggatttggttttgctcccacttcatattttgtaag |
22551974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 814 - 892
Target Start/End: Original strand, 22552070 - 22552148
Alignment:
| Q |
814 |
aattgtttcagcttcccagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattg |
892 |
Q |
| |
|
|||||||||||||||| || ||||||||| | ||||||||||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
22552070 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattg |
22552148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 428 - 471
Target Start/End: Original strand, 22550823 - 22550866
Alignment:
| Q |
428 |
gtttatgcaatgcctgtttttgatttgattgagaggatgatgat |
471 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22550823 |
gtttatgctatgcctgtttttgatttgattgagaggatgatgat |
22550866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 657 - 727
Target Start/End: Original strand, 43855182 - 43855252
Alignment:
| Q |
657 |
ttcccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
727 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||| ||||| | ||||||||||| ||||||||||||| |
|
|
| T |
43855182 |
ttcccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag |
43855252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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