View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk148-18 (Length: 770)
Name: R108-tnk148-18
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-18 |
 | |
|
| [»] chr6 (19 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 248 - 770
Target Start/End: Original strand, 31171457 - 31171979
Alignment:
| Q |
248 |
aattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171457 |
aattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
31171556 |
T |
|
| Q |
348 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171557 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
31171656 |
T |
|
| Q |
448 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171657 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
31171756 |
T |
|
| Q |
548 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtcc |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31171757 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctgacattgaaataatgctctcttgttttggacagagttttgcaagtcc |
31171856 |
T |
|
| Q |
648 |
aaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
747 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171857 |
aaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
31171956 |
T |
|
| Q |
748 |
tctaacccacgagctatcccttt |
770 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
31171957 |
tctagcccacgagctatcccttt |
31171979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 248 - 770
Target Start/End: Original strand, 31145144 - 31145666
Alignment:
| Q |
248 |
aattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
347 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145144 |
aattcatgttaacttctaacatttcaataactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
31145243 |
T |
|
| Q |
348 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145244 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
31145343 |
T |
|
| Q |
448 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145344 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
31145443 |
T |
|
| Q |
548 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtcc |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31145444 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctgacattgaaataatgctctcttgttttggacagagttttgcaagtcc |
31145543 |
T |
|
| Q |
648 |
aaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
747 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145544 |
aaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
31145643 |
T |
|
| Q |
748 |
tctaacccacgagctatcccttt |
770 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
31145644 |
tctagcccacgagctatcccttt |
31145666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 248 - 770
Target Start/End: Original strand, 31189202 - 31189724
Alignment:
| Q |
248 |
aattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31189202 |
aattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctcct |
31189301 |
T |
|
| Q |
348 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
447 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189302 |
tgcaatctcgtcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
31189401 |
T |
|
| Q |
448 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
547 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189402 |
gtgtgacttgcatcagcaataatgtttttcctcccaccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
31189501 |
T |
|
| Q |
548 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtcc |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31189502 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctgtcatcgaaataatgctctctttttttggacagagttttgcaagtcc |
31189601 |
T |
|
| Q |
648 |
aaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
747 |
Q |
| |
|
||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31189602 |
aaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctatgcaagtac |
31189701 |
T |
|
| Q |
748 |
tctaacccacgagctatcccttt |
770 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
31189702 |
tctagtccacgggctatcccttt |
31189724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 248 - 770
Target Start/End: Original strand, 31201009 - 31201531
Alignment:
| Q |
248 |
aattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31201009 |
aattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctcct |
31201108 |
T |
|
| Q |
348 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
447 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
31201109 |
tgcaatcttgtcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcactt |
31201208 |
T |
|
| Q |
448 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
547 |
Q |
| |
|
||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
31201209 |
gtgagacttgcatcagcattaatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaa |
31201308 |
T |
|
| Q |
548 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtcc |
647 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
31201309 |
aatgtctattccacatttctggagctacatatcccatagtccctctttgatctgacatcgaaataatgctctcgttccttggacaaagttttgcaagtcc |
31201408 |
T |
|
| Q |
648 |
aaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
747 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201409 |
aaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatgtaaaattcgagtggtacatcctctatgcaagtac |
31201508 |
T |
|
| Q |
748 |
tctaacccacgagctatcccttt |
770 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
31201509 |
tctagtccacgagctattccttt |
31201531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 248 - 770
Target Start/End: Complemental strand, 31224947 - 31224425
Alignment:
| Q |
248 |
aattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
347 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||| |||||| | ||||| |||||||| ||||| ||||| ||||| ||||||||||| |
|
|
| T |
31224947 |
aattcatgctaacatctaacatttcaatcactttactcattgtaggcctatcattaggaaacgtttgaatacaccacaaacctacaatggtcattctcct |
31224848 |
T |
|
| Q |
348 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
447 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||| | || | | ||||||| ||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
31224847 |
tgcaatcttatcttcttctgtatccattattccatcaggtctaaaatcactagcaagctcaagccttttgtatacccaatgaggaaaatatatctcactt |
31224748 |
T |
|
| Q |
448 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
547 |
Q |
| |
|
||| |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31224747 |
gtgcgacttgcatcagcattaatgtttttcctccctccaaccatttccagcaatatcattccataactataaacatcagacttgtgtgaaactcctccaa |
31224648 |
T |
|
| Q |
548 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtcc |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| |||||| ||| | |||| |||||||||||||| |
|
|
| T |
31224647 |
aatgtctattccacacttctggagctacataccccattgttcctctttgatctgacattgaaacaatgctttctttcctgagacatagttttgcaagtcc |
31224548 |
T |
|
| Q |
648 |
aaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
747 |
Q |
| |
|
||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
31224547 |
aaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaaaatgtaaaattctagtggtacatcctccatgcaagtac |
31224448 |
T |
|
| Q |
748 |
tctaacccacgagctatcccttt |
770 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
31224447 |
tctagtccacgagctatcccttt |
31224425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 258 - 770
Target Start/End: Complemental strand, 30992914 - 30992402
Alignment:
| Q |
258 |
aacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctca |
357 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| ||||| |||| |||||| ||||| ||| ||||||||||| |
|
|
| T |
30992914 |
aacttctaacatttcaactactttactcattgtaggtctgccattaggaaatgtttgaatacaccacaaactcacaatggtcatcctctttgcaatctca |
30992815 |
T |
|
| Q |
358 |
tcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttg |
457 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| || | | ||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
30992814 |
tcttcttccgtatccattaccccatcaggtctcaaataactaccaagttcaagcctattgtatacccaatgaggaaagtatatctcacttgtgtgacttg |
30992715 |
T |
|
| Q |
458 |
catcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctatt |
557 |
Q |
| |
|
|||| ||| | || ||||||| || || |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30992714 |
catccgcattaatatttttccgtccacccaccatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctatt |
30992615 |
T |
|
| Q |
558 |
ccacacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtccaaagtctgaa |
657 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| | ||| |||| |||||| ||| || | || || ||||| |||||||| ||||| |
|
|
| T |
30992614 |
ccacacttctggagctacataccccattgtccctctttgatccgacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgag |
30992515 |
T |
|
| Q |
658 |
atctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctaacccac |
757 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| ||||| |
|
|
| T |
30992514 |
atctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggcacatcctctatgcaaatattctagcccac |
30992415 |
T |
|
| Q |
758 |
gagctatcccttt |
770 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
30992414 |
gggctatcccttt |
30992402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 248 - 770
Target Start/End: Complemental strand, 30961442 - 30960920
Alignment:
| Q |
248 |
aattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctcct |
347 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||| || || | |||||||||||||| ||||| ||||||||||| ||||||||| | |
|
|
| T |
30961442 |
aattcatgttaacttctaacatttcaactactttactcattgtaggcctgccattaggaaatgtttgaatacaccacaaacccacaatggtcattctctt |
30961343 |
T |
|
| Q |
348 |
tgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcacta |
447 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||||||||| || | | ||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30961342 |
tgcaatctcattttcttctgtatcagttaccccatcaggtctcaaatcactaccaagttcaagcctattgtatacccaatgaggaaagtatatctcactt |
30961243 |
T |
|
| Q |
448 |
gtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaa |
547 |
Q |
| |
|
|||||||||||||| ||| | || ||||||| || || |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30961242 |
gtgtgacttgcatccgcattaatatttttccgtccacccaccatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaa |
30961143 |
T |
|
| Q |
548 |
aatgtctattccacacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtcc |
647 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| |||| |||||| ||| || | || || ||||| ||||| |
|
|
| T |
30961142 |
aatgtctattccacacttcaggagctacataccccattgtccctctttgatccgacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtcc |
30961043 |
T |
|
| Q |
648 |
aaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtac |
747 |
Q |
| |
|
||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
30961042 |
aaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtagcacatcctctatgcaaatat |
30960943 |
T |
|
| Q |
748 |
tctaacccacgagctatcccttt |
770 |
Q |
| |
|
|||| |||||| ||||||||||| |
|
|
| T |
30960942 |
tctagcccacgggctatcccttt |
30960920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 260 - 770
Target Start/End: Complemental strand, 31230215 - 31229705
Alignment:
| Q |
260 |
cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatc |
359 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||| |
|
|
| T |
31230215 |
cttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatc |
31230116 |
T |
|
| Q |
360 |
ttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttgca |
459 |
Q |
| |
|
|||||| | | || || | || ||||||| || | ||| || || || | |||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
31230115 |
ttcttccgagacaatcacttcgtccggtctcaaatcattgcgtagatcaagattcttgtatacccaatgaggaaagtatatctcacttgtttgacttgca |
31230016 |
T |
|
| Q |
460 |
tcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattcc |
559 |
Q |
| |
|
|| || | |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||| | |||||| |
|
|
| T |
31230015 |
tcggcgttaatgtttttcctcccaccaaccatttctagcaacatcattccataactataaacgtcagacttgtgcgaaactcatccaaaatttatattcc |
31229916 |
T |
|
| Q |
560 |
acacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtccaaagtctgaaat |
659 |
Q |
| |
|
| | || ||||||||||| |||||||||||||| |||| ||| ||||||||||||||| || | || ||| ||| ||||||||| ||||| || |
|
|
| T |
31229915 |
ataactcaggagctacataccccattgtccctctagcgtctgacatagaaataatgctctctttcttatggcaaagtcttgaaagtccaaaatctgatat |
31229816 |
T |
|
| Q |
660 |
ctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctaacccacga |
759 |
Q |
| |
|
||||||||| ||||| |||| ||| || |||||||||||||| |||||||||||||| |||| |||| ||||||| ||||||||||||| | ||| ||| |
|
|
| T |
31229815 |
ctttggacaaaaattctcatataagaggatgttatgtggtttgatgtcaaaatgtaagattcaagtgctacatcccttatgcaagtactcaagccctcga |
31229716 |
T |
|
| Q |
760 |
gctatcccttt |
770 |
Q |
| |
|
||||||||||| |
|
|
| T |
31229715 |
gctatcccttt |
31229705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 260 - 770
Target Start/End: Complemental strand, 31214663 - 31214156
Alignment:
| Q |
260 |
cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatc |
359 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||||||||| |||||| |||||||||||||||||| || || || ||||||||| |||| || ||||| |
|
|
| T |
31214663 |
cttctaacatttcaataactctactcattgcaggtctatcatttggaagtgtttgaatgcaccataatcctactatggtcattctctttgcgatgtcatc |
31214564 |
T |
|
| Q |
360 |
ttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttgca |
459 |
Q |
| |
|
||| || | || || |||| |||||| || |||| | || || | ||| ||||||||||||| ||||||||| ||||||| || ||||||||| |
|
|
| T |
31214563 |
atct---gtggcaatcacttcatcgtgtctcaaatcagtgtctagatcaaaccttttgtatacccaatcaggaaagtatttctcacttgtatgacttgca |
31214467 |
T |
|
| Q |
460 |
tcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattcc |
559 |
Q |
| |
|
| ||| | ||||||||||| ||||| | ||||||| |||||||||||| ||||||||||||||||| |||| ||||| |||||||| | |||||||| |
|
|
| T |
31214466 |
ttggcactaatgtttttccttcctccgattatttccaacaacatcattccgtaactataaacatcagacttgtacgaaacgcctccaaagtttctattcc |
31214367 |
T |
|
| Q |
560 |
acacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtccaaagtctgaaat |
659 |
Q |
| |
|
||| || ||||||||||||||||| || ||||| | ||| ||| ||||||||||| ||| || |||| ||| ||||||||||||| ||||| || |
|
|
| T |
31214366 |
acaactcaggagctacatatcccatcgttcctctagcacctgacatcgaaataatgctttctttcttgagacaaagtcttgcaagtccaaaatctgatat |
31214267 |
T |
|
| Q |
660 |
ctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctaacccacga |
759 |
Q |
| |
|
||||||||| |||||||||||||| | ||| |||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||| ||||| ||| |
|
|
| T |
31214266 |
ctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattcgagtactgcatcctctatgcaggtactccaaccctcga |
31214167 |
T |
|
| Q |
760 |
gctatcccttt |
770 |
Q |
| |
|
||||||||||| |
|
|
| T |
31214166 |
gctatcccttt |
31214156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 260 - 770
Target Start/End: Complemental strand, 30955682 - 30955175
Alignment:
| Q |
260 |
cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatc |
359 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
30955682 |
cttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatt |
30955583 |
T |
|
| Q |
360 |
ttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttgca |
459 |
Q |
| |
|
|||||| | |||| || |||||||||| || | | | |||||| ||||||||| ||||| |||||| || ||| ||||| ||| ||| | |
|
|
| T |
30955582 |
ttcttcaatggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaata---ctcgctagtttgatttgta |
30955486 |
T |
|
| Q |
460 |
tcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattcc |
559 |
Q |
| |
|
| | || || || || ||| |||||||||| || | | ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
30955485 |
ttaacatcaatattgtttctcactccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattcc |
30955386 |
T |
|
| Q |
560 |
acacttctggagctacatatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtccaaagtctgaaat |
659 |
Q |
| |
|
| |||||||||||||||||||| | ||| |||||| || || ||| | ||| |||||||| | ||||||| |||||||||||||| |||||||| |
|
|
| T |
30955385 |
atacttctggagctacatatccgactgttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaat |
30955286 |
T |
|
| Q |
660 |
ctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctaacccacga |
759 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||| |||||||| ||||| || || ||| |
|
|
| T |
30955285 |
ctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgcaaatactccaaacctcga |
30955186 |
T |
|
| Q |
760 |
gctatcccttt |
770 |
Q |
| |
|
||||||||||| |
|
|
| T |
30955185 |
gctatcccttt |
30955175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 501 - 770
Target Start/End: Complemental strand, 30945184 - 30944915
Alignment:
| Q |
501 |
catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct |
600 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| |||||| || | |
|
|
| T |
30945184 |
catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt |
30945085 |
T |
|
| Q |
601 |
ggcattgaaataatgctctctggttttggacagagttttgcaagtccaaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt |
700 |
Q |
| |
|
| ||| ||||| |||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30945084 |
gacatgaaaatagtgctctctttcttgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgcggtt |
30944985 |
T |
|
| Q |
701 |
ttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctaacccacgagctatcccttt |
770 |
Q |
| |
|
||||||||||||||||||| || | |||| || |||||||| ||||| || | |||||||||||||| |
|
|
| T |
30944984 |
ttatgtcaaaatgtaaaatccggatattacaccccctatgcaaatactccaaacttcgagctatcccttt |
30944915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 260 - 365
Target Start/End: Complemental strand, 30945422 - 30945317
Alignment:
| Q |
260 |
cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatc |
359 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
30945422 |
cttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatagtcattccttttgcaatctcatt |
30945323 |
T |
|
| Q |
360 |
ttcttc |
365 |
Q |
| |
|
|||||| |
|
|
| T |
30945322 |
ttcttc |
30945317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31145662 - 31145710
Alignment:
| Q |
1 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145662 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
31145710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31171975 - 31172023
Alignment:
| Q |
1 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171975 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
31172023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31201527 - 31201575
Alignment:
| Q |
1 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
49 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
31201527 |
ccttttgcaatttgatacaaattatcccaactcaaagatgcaatggttt |
31201575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31189720 - 31189764
Alignment:
| Q |
1 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaatt |
45 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
31189720 |
ccttttgcaatttgatacaaattatcccaactcaaagatgtaatt |
31189764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31224429 - 31224381
Alignment:
| Q |
1 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
49 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||||||||||| |
|
|
| T |
31224429 |
ccttttgcaattttatacaatttatcccaactcaaagatgcaattgttt |
31224381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30944919 - 30944871
Alignment:
| Q |
1 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
49 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
30944919 |
cctttggcaatttgatacaaattatcccaacttaaagatgcaatggttt |
30944871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30955179 - 30955131
Alignment:
| Q |
1 |
ccttttgcaatttgatacaaattctcccaactcaaagatgcaattgttt |
49 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
30955179 |
cctttggcaatttgatagaaattatcccaactcaaagatgcaatggttt |
30955131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 45259177 - 45259387
Alignment:
| Q |
41 |
caattgttttgactgacaagaatgtatgacggggatctagggtccaaagtgacagtcaccagttcgaaattttggtccctgactttacacctcgctatca |
140 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
45259177 |
caattgttttaactgacaagaatgtatgacgtggatctagggtccaaagtgacagtcaccagttcgaaattttggtccctgactttactcctcgctgtca |
45259276 |
T |
|
| Q |
141 |
caatggtcgttgactcgagataaaatacaaaatactcattggatgtgtacctccaatagccattatagtccttaatgttaaaattggtcgttaaaaggtg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45259277 |
caatggtcgttgactcgagataaaatacaaaatactcattggatgtgtacctccaatagccattatagtccttaacgttaaaattggtcgttaaaaggtg |
45259376 |
T |
|
| Q |
241 |
agatgacaatt |
251 |
Q |
| |
|
||||||||||| |
|
|
| T |
45259377 |
agatgacaatt |
45259387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 475 - 768
Target Start/End: Complemental strand, 44035886 - 44035593
Alignment:
| Q |
475 |
ttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagcta |
574 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||| |||||||| |||||||| || |||||||| || || ||| | | || | ||||| ||||| | |
|
|
| T |
44035886 |
ttccgcccaccaaccatttctagcaacatcattccgtaactatagacatcagacttatgtgaaacgcccccgaaacttttgttgaaaacttcaggagcaa |
44035787 |
T |
|
| Q |
575 |
catatcccattgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtccaaagtctgaaatctttggacataaatt |
674 |
Q |
| |
|
|||| || | |||||||| | || |||||||||||||||||| ||| | ||||| ||||||||||| || || ||||| |||| || | |
|
|
| T |
44035786 |
catacccaacagtccctctagcgtttgacattgaaataatgctctcattgcttgtgcttagtttagcaagtccaaaatcagatatcttgggacggtaagt |
44035687 |
T |
|
| Q |
675 |
ttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctaacccacgagctatccct |
768 |
Q |
| |
|
||| || |||||||||||||||||||| ||||| ||||| ||||| | |||| | || ||| ||||||||||||||| || |||||||||||| |
|
|
| T |
44035686 |
ttcgtccaaaagaatgttatgtggtttaatgtcgaaatgaaaaatcctagtgttgcaccctttatgcaagtactctagtcctcgagctatccct |
44035593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 44036105 - 44036030
Alignment:
| Q |
265 |
aacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtca |
340 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| | | |||| ||||||||||||||| ||||| || ||||||| |
|
|
| T |
44036105 |
aacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaaccaaccatagtca |
44036030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 626 - 761
Target Start/End: Complemental strand, 49714466 - 49714331
Alignment:
| Q |
626 |
ttggacagagttttgcaagtccaaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagt |
725 |
Q |
| |
|
||||||| | ||| |||||||| || |||||||| || ||||| |||| |||||| | | || ||||| ||||| |||||||||||||| |||| ||| |
|
|
| T |
49714466 |
ttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgaggtttaatgtcaaaatgtaagattctagt |
49714367 |
T |
|
| Q |
726 |
ggtacatcctctatgcaagtactctaacccacgagc |
761 |
Q |
| |
|
| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
49714366 |
gttacagcctctgtgcaagtactctaacccacgagc |
49714331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 484 - 761
Target Start/End: Complemental strand, 49683357 - 49683080
Alignment:
| Q |
484 |
ccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatccca |
583 |
Q |
| |
|
||||||||||| | | ||||||||||||||| || ||||| ||||||||||| || || |||||||||||| ||| |||||||| | |||||| |
|
|
| T |
49683357 |
ccaaccatttctaaaaccatcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtctagagaacagctctggagcaatatatcctg |
49683258 |
T |
|
| Q |
584 |
ttgtccctctttgatctggcattgaaataatgctctctggttttggacagagttttgcaagtccaaagtctgaaatctttggacataaattttcatctaa |
683 |
Q |
| |
|
|||||| ||| | | ||||| | |||||| ||| | ||||||| | ||| ||||||||||| |||||||| |||||||| |||| || || | |
|
|
| T |
49683257 |
gtgtcccccttgcaccaaatattgatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaag |
49683158 |
T |
|
| Q |
684 |
aagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctaacccacgagc |
761 |
Q |
| |
|
| || ||||| |||||||||||||||||||| |||| |||| | || ||||| |||| |||||||||||||||||| |
|
|
| T |
49683157 |
taatatattatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctgtgcatgtactctaacccacgagc |
49683080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 640 - 761
Target Start/End: Complemental strand, 49710811 - 49710689
Alignment:
| Q |
640 |
gcaagtccaaagtctgaaatctttggacataaattt-tcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctcta |
738 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| ||||||| | || ||||| ||||||||||||||||| || |||| |||| | || ||||| |
|
|
| T |
49710811 |
gcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatgtcaaaatgcaagattctagtgttgcagcctctg |
49710712 |
T |
|
| Q |
739 |
tgcaagtactctaacccacgagc |
761 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
49710711 |
tgcaagtactctagtccacgagc |
49710689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 640 - 761
Target Start/End: Complemental strand, 49215473 - 49215352
Alignment:
| Q |
640 |
gcaagtccaaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctat |
739 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||| ||| ||| | || ||||| ||| ||||||||||||| || |||| |||| |||| ||||| | |
|
|
| T |
49215473 |
gcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaatgcaagattctagtgttacagcctctgt |
49215374 |
T |
|
| Q |
740 |
gcaagtactctaacccacgagc |
761 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
49215373 |
gcaagtactctaatccacgagc |
49215352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 670 - 721
Target Start/End: Complemental strand, 49725197 - 49725146
Alignment:
| Q |
670 |
aaattttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattc |
721 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
49725197 |
aaattctcatccaaaagaatgttatgaggttttatgtcaaaatgcaaaattc |
49725146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 52968533 - 52968616
Alignment:
| Q |
111 |
tttggtccctgactttacacctcgctatcacaatggtcgttgactcgagataaaatacaaaatactcattggatgtgtacctcc |
194 |
Q |
| |
|
|||||||| | ||||| ||||||| | |||||||||| |||||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
52968533 |
tttggtccttcactttgcacctcgttgtcacaatggtacatgactcaagataaaatacaaaatgatcactggatgtgtacctcc |
52968616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 532
Target Start/End: Complemental strand, 10907039 - 10906998
Alignment:
| Q |
491 |
tttccagcaacatcattccataactataaacatcagatttgt |
532 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10907039 |
tttcaagcaacatcattccataactataaacatctgatttgt |
10906998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 532
Target Start/End: Complemental strand, 10930922 - 10930881
Alignment:
| Q |
491 |
tttccagcaacatcattccataactataaacatcagatttgt |
532 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10930922 |
tttcaagcaacatcattccataactataaacatctgatttgt |
10930881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 532
Target Start/End: Complemental strand, 10993126 - 10993085
Alignment:
| Q |
491 |
tttccagcaacatcattccataactataaacatcagatttgt |
532 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10993126 |
tttcaagcaacatcattccataactataaacatctgatttgt |
10993085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 17589751 - 17589674
Alignment:
| Q |
111 |
tttggtccctgactttacacctcgctatcacaatggtcgttgactcgagataaaatacaaaatactcattggatgtgt |
188 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| | |||| |||||||||||||||| || ||||||||| |
|
|
| T |
17589751 |
tttggtccctgactttgcacctcgctgacacaatggtctctaactccggataaaatacaaaatagtccctggatgtgt |
17589674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 554
Target Start/End: Complemental strand, 49215612 - 49215559
Alignment:
| Q |
501 |
catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtct |
554 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| || || ||||||||||| |
|
|
| T |
49215612 |
catcattccataactataaacatctgatttatgtgacaccccaccaaaatgtct |
49215559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 11041285 - 11041245
Alignment:
| Q |
491 |
tttccagcaacatcattccataactataaacatcagatttg |
531 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11041285 |
tttcaagcaacatcattccataactataaacatccgatttg |
11041245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 49725400 - 49725317
Alignment:
| Q |
467 |
tgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaat |
550 |
Q |
| |
|
|||||||||| |||| ||||||||||||| | ||||||||||||||| |||||||| || || ||||| ||| | ||||||| |
|
|
| T |
49725400 |
tgatgttttttctcctcccaaccatttccatgaccatcattccataactgtaaacatctgacttatgtgacactgcaccaaaat |
49725317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 572
Target Start/End: Complemental strand, 49728788 - 49728717
Alignment:
| Q |
501 |
catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagc |
572 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || || || ||||||| |||| ||||||||||||| |
|
|
| T |
49728788 |
catcattccataactatatacatcagatttgtgagagacgccaccaaaatttctagagaacacttctggagc |
49728717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 527
Target Start/End: Original strand, 9125105 - 9125151
Alignment:
| Q |
481 |
cctccaaccatttccagcaacatcattccataactataaacatcaga |
527 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
9125105 |
cctccaaccaattccagcaacaacatcccataactataaatatcaga |
9125151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 532
Target Start/End: Complemental strand, 11026582 - 11026541
Alignment:
| Q |
491 |
tttccagcaacatcattccataactataaacatcagatttgt |
532 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11026582 |
tttcaagcaacatcattccataactgtaaacatctgatttgt |
11026541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 17200786 - 17200704
Alignment:
| Q |
111 |
tttggtccctgactttacacctcgctatcacaatggtcgttgactcgagataaaatacaaaatactcattggatgtgtacctc |
193 |
Q |
| |
|
||||||| ||||| ||||| |||||| |||||||||| || |||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
17200786 |
tttggtctctgaccttacatctcgctgtcacaatggttctttactcaagataaaatacaaaatagtctctggatgtgtacctc |
17200704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 715
Target Start/End: Original strand, 31618457 - 31618529
Alignment:
| Q |
643 |
agtccaaagtctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatgtcaaaatgta |
715 |
Q |
| |
|
|||||||| ||||| || |||||||| |||| |||||| ||||||||||| || |||||||| |||| ||||| |
|
|
| T |
31618457 |
agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgta |
31618529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 31614566 - 31614633
Alignment:
| Q |
481 |
cctccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaa |
548 |
Q |
| |
|
||||||| |||||| || | || ||||||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
31614566 |
cctccaatcatttcaagaatcaacattccataactatatacatcagatttgtaagaaactccgccaaa |
31614633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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