View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-2 (Length: 733)
Name: R108-tnk148-2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 733
Target Start/End: Complemental strand, 32085124 - 32084398
Alignment:
| Q |
1 |
acaatatgatgttgatgggaagcaaatatgataagacatggactggaagcaaagagtaaggtcagacacaagagaggccaaatgagatgcctaaaagaaa |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
32085124 |
acaatatgatgttgatggaaagcaaatatgataagacatagactggaagcaaagagtaaggccagacacaagagaggccacatgagatgcctaaaagaaa |
32085025 |
T |
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| Q |
101 |
gatcatgactccaaagtactttagggattatgtcaaatcatctataagaaagccacacccttgcatttcctaatatattgatgtgattccagcattttca |
200 |
Q |
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| T |
32085024 |
gatcatgtctccaaagtactttagggattatgtcaaatcatctataagaaagccacacctttgcatttcctaatatattgatgtgattccagcattttca |
32084925 |
T |
|
| Q |
201 |
aatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatttactcagttcctaatacttcggta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32084924 |
aatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatttactcagttcctaatactttggta |
32084825 |
T |
|
| Q |
301 |
ttttcatcgagctaatctggagactactcgttcaaaatccaccgctaataaaatggaagaagccgttagcaaactcactaccaatcaatccacccttggt |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32084824 |
ttttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagccattagcaaactcactaccaatcaatccacccttggt |
32084725 |
T |
|
| Q |
401 |
gaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaatacccattccctctgattctgcttcccttccaccac |
500 |
Q |
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| T |
32084724 |
gaaacccaaactcttacggcctccaaaattgacgacattctccacaaattagcgtcccttgaaatacccattccctctaattctgcttcccttccaccac |
32084625 |
T |
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| Q |
501 |
catccatcccttcctcctgccaaactacaatcacaatgtatgaagctcgatgtaccatgaaattttagcatcttgtagtgacctcgccattaggcttaga |
600 |
Q |
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| T |
32084624 |
catccatcccttcctcctgccaaacta------caatgtatgaagctcgatgtaccatgaaattttagcatcttgtagtgacctcgccattaggcttaga |
32084531 |
T |
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| Q |
601 |
atttgttgtaacctgaatttgatagtgggctatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccattaggctttgaacttgat |
700 |
Q |
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| T |
32084530 |
atttgttgtaacctgaatttgatagtgggctatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccattaggctttgaacttgat |
32084431 |
T |
|
| Q |
701 |
gtgaacctgaattttatcacacgtaattacaat |
733 |
Q |
| |
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| T |
32084430 |
gtgaacctgaattttatcagacataattacaat |
32084398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 177 - 567
Target Start/End: Complemental strand, 32086411 - 32086029
Alignment:
| Q |
177 |
attgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatt |
276 |
Q |
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||||| || ||||||||||||| |||||||| |||| | |||| ||||||||| |||||||||||||||||| ||| ||| | |||| ||||||| |
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| T |
32086411 |
attgaagtaattccagcattttgaaatcaagaaagaatctaaatttcattatctttttccttcttaggaggttgc--tagtccttgaactattgcaaatt |
32086314 |
T |
|
| Q |
277 |
tactcagttcctaatacttcggtattttcatcgagctaatctggagactactcgttcaaaatccaccgctaataaaatggaagaagccgttagcaaactc |
376 |
Q |
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||| |||||||||| |||| ||| ||||||||| ||||||| | ||||| |||| ||| |||| || ||||||||||||||||| ||||||||||| |
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| T |
32086313 |
tacccagttcctaacactttggtgttttcatcgggctaatccaaaaactacatgttcgaaagccacagccgataaaatggaagaagccattagcaaactc |
32086214 |
T |
|
| Q |
377 |
actaccaatcaatccacccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaatacccattccct |
476 |
Q |
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| T |
32086213 |
attactgatcaatttacccttgttgaaatccaaactctcccggcctccctaattgatgacattctccacaagttagcctcccttgacatacccactctct |
32086114 |
T |
|
| Q |
477 |
ctgattctgcttc-ccttccaccaccatccatcccttcctcctgccaaactacaatcacaatgtatgaagctcgatgtaccatgaaatttta |
567 |
Q |
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| T |
32086113 |
ctg-ttatgcttctccttccaccatcaaccatcccctcctcctaccaaac------cacaccgcatgaagctcgatgtaccatgaaatttta |
32086029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 717
Target Start/End: Complemental strand, 32085960 - 32085863
Alignment:
| Q |
620 |
tgatagtgggctatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccattaggctttgaacttgatgtgaacctgaattttat |
717 |
Q |
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|||||||||| | ||||||||||||| | ||| |||||| |||||||||| ||| ||||||||||||||| ||| ||| |||||||||||||||||| |
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| T |
32085960 |
tgatagtgggttgtgtaacatccctgattattagctctagctagtcttagtatcgttagtccattaggctaagaatttgttgtgaacctgaattttat |
32085863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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