View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-20 (Length: 355)
Name: R108-tnk148-20
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-20 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 35449432 - 35449149
Alignment:
| Q |
1 |
ctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatccaatttatcttatgagttgaataatggtggatca |
100 |
Q |
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| T |
35449432 |
ctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatccaatttatcttatgagttgaataatggtggatca |
35449333 |
T |
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| Q |
101 |
ttgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatgagggaa |
200 |
Q |
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| T |
35449332 |
tcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatgagggaa |
35449233 |
T |
|
| Q |
201 |
cagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtactgatgaaaatgtcctggaggcctgcccaattg |
284 |
Q |
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| T |
35449232 |
tagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtattgatgaaaatgtcctggaggcctgcccaattg |
35449149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 108 - 284
Target Start/End: Complemental strand, 35449094 - 35448918
Alignment:
| Q |
108 |
gtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatgagggaacagccat |
207 |
Q |
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| T |
35449094 |
gtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccat |
35448995 |
T |
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| Q |
208 |
atcagaacctgaatatccaagttcttctactcgcatgtttggtactgatgaaaatgtcctggaggcctgcccaattg |
284 |
Q |
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| T |
35448994 |
aacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattg |
35448918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 35449465 - 35449428
Alignment:
| Q |
318 |
attttgttttacagcaactgagaatccagcatgctatt |
355 |
Q |
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| T |
35449465 |
attttgttttacagcaactgagaatccagcatgctatt |
35449428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 35441176 - 35440925
Alignment:
| Q |
6 |
atgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatccaatttatcttatgagttgaataatggtggatcattgtt |
105 |
Q |
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| T |
35441176 |
atgtttctgtgcaaactccagaaggcttgaactcaaaaaatctgcaacatggtgtggtatccaatttttctgatctgtttaataacaaaggatcatcatt |
35441077 |
T |
|
| Q |
106 |
tggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatgagggaacagcc |
205 |
Q |
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| T |
35441076 |
tggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatgggggaatgacc |
35440977 |
T |
|
| Q |
206 |
atatcagaacctgaatatccaagttcttctactcgcatgtttggtactgatg |
257 |
Q |
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| T |
35440976 |
atatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatg |
35440925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 35448886 - 35448780
Alignment:
| Q |
88 |
taatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaagga |
187 |
Q |
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|||||||||||||| ||| ||||||||| |||||||||| |||||| || || ||||||| ||||||||||| | ||||||| || || |||||| |
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| T |
35448886 |
taatggtggatcatcatttcatatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaagga |
35448787 |
T |
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| Q |
188 |
attaatg |
194 |
Q |
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|||||| |
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| T |
35448786 |
gttaatg |
35448780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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