View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-21 (Length: 558)
Name: R108-tnk148-21
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-21 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 43616479 - 43616888
Alignment:
| Q |
1 |
ggaatactgtaagacttatgtagctaatgttgatatgagttatgatgtggtgaattaattagagttgctcatggtatattgcagagtggagaaggtaaat |
100 |
Q |
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| T |
43616479 |
ggaatactgtaagacttatatagctaatgttgatatgagttatgatgtggtgaattaattagagttgctcatggtatattgcagagtggagaaggtaaat |
43616578 |
T |
|
| Q |
101 |
ttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcattttacaagggaccccaattacggatca |
200 |
Q |
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| T |
43616579 |
ttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcattttacaagggaccccaattacggatcg |
43616678 |
T |
|
| Q |
201 |
cgcgtcatcttctatctggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcct |
300 |
Q |
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| T |
43616679 |
cgcgtcatcttctatctggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcct |
43616778 |
T |
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| Q |
301 |
aggcaccatcatgtggagcttgtggcttgtacttcaggtaccattaatttaatttcaatttgcggtataaggtctagaatgatgaaaacatttgtgttac |
400 |
Q |
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| T |
43616779 |
aggcaccatcatgtggagcttgtggcttgtacttcaggtaccattaatttaatttcaatttgtggtataaggtctagaatgatgaaaacatttgtgttac |
43616878 |
T |
|
| Q |
401 |
attatgaatt |
410 |
Q |
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| T |
43616879 |
attatgaatt |
43616888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 75 - 354
Target Start/End: Original strand, 43609928 - 43610206
Alignment:
| Q |
75 |
tatattgcagagtggagaaggtaaatttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcatt |
174 |
Q |
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| T |
43609928 |
tatattgtagagtggagaaggtaaatataaggacaaaatctggaatttcaaagatagggagtgttttattgtgcatggccggtgtagcgattctggcctt |
43610027 |
T |
|
| Q |
175 |
ttacaagggaccccaattacggatcacgcgtcatcttctatctggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatgg |
274 |
Q |
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| T |
43610028 |
ttacaagggaccccaattgcgaattgcacgtcacctcccatctggatatcatcacaactatcaacaacatgaagatagtgaatcatatgacaaaaaatgg |
43610127 |
T |
|
| Q |
275 |
attttgggtgctttactcttgttcctaggcaccatcatgtggagcttgtggcttgtacttcaggtaccattaatttaatt |
354 |
Q |
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| T |
43610128 |
attttgggttctttactcttgttcctaactaccattacctggagtttgtggattgtacttcaggtagca-taatttaatt |
43610206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 407 - 558
Target Start/End: Original strand, 43616332 - 43616483
Alignment:
| Q |
407 |
aattgttaactgtcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaaccacattaattttcatctaagcttcattacagaa |
506 |
Q |
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| T |
43616332 |
aattgttaactgtcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaaccacattaattttcatctaagcttcattacagaa |
43616431 |
T |
|
| Q |
507 |
aagtaatataaaaattttattcgtaaagagaatgttgattacatgaaggaat |
558 |
Q |
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| T |
43616432 |
aagtaatataaaaattttattcgtaaagagaatgttgattacatgaaggaat |
43616483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 87 - 354
Target Start/End: Original strand, 43603531 - 43603798
Alignment:
| Q |
87 |
tggagaaggtaaatttaaggacaaaatctggaatttcaaagataggaagtgtattattgtgcatggccggtgtagcgattctggcattttacaagggacc |
186 |
Q |
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| T |
43603531 |
tggaaaaggtaaatataaggacaatatctggaatttcaaagatagtgagtgtattattgtgtatggctggtgttgcgattctggcattttacaagggacc |
43603630 |
T |
|
| Q |
187 |
ccaattacggatcacgcgtcatcttctatctggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgct |
286 |
Q |
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| T |
43603631 |
tcaaatacggattgcgcggcatctcctatctggatatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttct |
43603730 |
T |
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| Q |
287 |
ttactcttgttcctaggcaccatcatgtggagcttgtggcttgtacttcaggtaccattaatttaatt |
354 |
Q |
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| T |
43603731 |
ttcctcttgttcctagccacagtcatgtggagtttgtggattgtatttcaggtaccgtttatttaatt |
43603798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 43609787 - 43609861
Alignment:
| Q |
407 |
aattgttaactgtcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaaccacattaa |
481 |
Q |
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| T |
43609787 |
aattgttaattgtcttccggcttcgacattcttctttgctgttctgctcaggtaaatttttgaaaaccacattaa |
43609861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 489
Target Start/End: Original strand, 43603379 - 43603461
Alignment:
| Q |
408 |
attgttaactgtcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaa-ccacattaattttcatc |
489 |
Q |
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| T |
43603379 |
attgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatc |
43603461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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