View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-22 (Length: 980)
Name: R108-tnk148-22
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-22 |
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Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 20 - 708
Target Start/End: Complemental strand, 51214067 - 51213384
Alignment:
| Q |
20 |
gaattctcagctttatcaaaccatcctacttccatgtgaattattttctcgaagcacattaaccggattctttttatcaatttagaaccagctgcagcaa |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51214067 |
gaattctcagctttatcaaaccatcctacttccatgtgaattattttctcgaagcacattaaccggattctttttatcaatttagaaccagctacagcaa |
51213968 |
T |
|
| Q |
120 |
aagagtatgaccttaacggatgaaaaatgaaagatgccacgctaagggaaacaaatattaatgcccaaaattttgagtctttacgaagttcatctgcagg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213967 |
aagagtatgaccttaacggatgaaaaatgaaagatgccacgctaagggaaacaaatattaatgcccaaaattttgagtctttacgaagttcatctgcagg |
51213868 |
T |
|
| Q |
220 |
ctcaaaaaatgtatttatcattttggagatgagaaggcccagaataggtaacattgcaccatttactgttgctgccagagctcccatgagtaacaccggg |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213867 |
ctcaaaaaatgtatttatcattttggagattagaaggcccagaataggtaacattgcaccatttactgttgctgccagagctcccatgagtaacaccggg |
51213768 |
T |
|
| Q |
320 |
atttcaggcttgttaagataaacaaggagaaaaaatgggacatctcgagttttagttgatgatgcttttgctgaaggaacaacttcagaccctcctacta |
419 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213767 |
atttcaggcttgttaagataagcaaggagaaaaaatggggcatctcgagttttagttgatgatgcttttgctgaaggaacaacttcagaccctcctacta |
51213668 |
T |
|
| Q |
420 |
gtgtggctggcatagaatttgatgctatgaatgagttgtgactactgtttccaatccctgatgatccacggcttaaagacctttggcttgactctcttcc |
519 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51213667 |
gtgtgtctggcatagaatttgatgctatgaatgagttgtgactactgtttccaatccctgatgatccgcggcttaaagacctttggcttgactctcttcc |
51213568 |
T |
|
| Q |
520 |
agagtctacaaagttttctagcttatccgagtcattatcaccaaactgttctgatgaatcctttttaatttcttgcaatctaatgagttgactataagct |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213567 |
agagtctacaaagttttctagcttatccgagtcattatcaccaaactgttctgatgaatcctttttaatttcttgcaatctaatgagttgactataagct |
51213468 |
T |
|
| Q |
620 |
ccatcaggattttttagtggagctcagcatgtggtaccctaataatcagttagtagaagaaataaagaatgctgcattgcgacaaactt |
708 |
Q |
| |
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|||||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||| || |||| ||||||||||||||| |||| |
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| T |
51213467 |
ccatcaggat-ttttagt-gagctcagcatgt-gta-cctaataatcagttagtagaagatat-aagactgctgcattgcgacatactt |
51213384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 818 - 980
Target Start/End: Complemental strand, 51213328 - 51213166
Alignment:
| Q |
818 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213328 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
51213229 |
T |
|
| Q |
918 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgc |
980 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213228 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgc |
51213166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 818 - 977
Target Start/End: Complemental strand, 51157352 - 51157193
Alignment:
| Q |
818 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
917 |
Q |
| |
|
||||| |||| |||| |||||| | ||||| ||||||||| | ||| | || |||||||| |||| |||||||||||||| ||| ||||| |||||||| |
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| T |
51157352 |
tacctctttcaactatttttccatgatgaatgacagcaatggtttcaacatttcttattgtacttaagcggtgagctacaacgatagttgtccggtttat |
51157253 |
T |
|
| Q |
918 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgt |
977 |
Q |
| |
|
||| ||||| |||| | ||||||||| | ||| |||||||||||||||||||||||||| |
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|
| T |
51157252 |
cattattctctccaatgcctcttgtacaattctctcagattctgcatcaagggcacttgt |
51157193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 818 - 977
Target Start/End: Complemental strand, 51146230 - 51146071
Alignment:
| Q |
818 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
917 |
Q |
| |
|
||||| |||| |||| |||||||| ||||| |||||||| ||||| | || ||||| ||||| | |||||| ||||||| ||| || || |||||||| |
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| T |
51146230 |
tacctctttcaactatttttccttgatgaatgacagcaattgtatcaacatttcttatagtgctcaagcggtgtgctacaacgatagtcgtccggtttat |
51146131 |
T |
|
| Q |
918 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgt |
977 |
Q |
| |
|
||| ||||||| || | ||||||||| | ||| |||||||||||||||||||||||||| |
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|
| T |
51146130 |
cattattctgttcaatgcctcttgtacaattctctcagattctgcatcaagggcacttgt |
51146071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 845 - 977
Target Start/End: Original strand, 29936847 - 29936979
Alignment:
| Q |
845 |
gaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttatcataattctgtccagggtctcttgtac |
944 |
Q |
| |
|
|||| ||||||||| ||||| | || || ||||| |||| |||||||||||| | ||| || || ||||||||||| ||||| |||| | ||||||||| |
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| T |
29936847 |
gaatgacagcaatggtatcaacatttctgattgtacttaagcggtgagctacgacgattgtcgtccggtttatcattattctttccaatgcctcttgtac |
29936946 |
T |
|
| Q |
945 |
tactctttcagattctgcatcaagggcacttgt |
977 |
Q |
| |
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| ||| |||||||||||||||||||||||||| |
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| T |
29936947 |
aattctctcagattctgcatcaagggcacttgt |
29936979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 834 - 977
Target Start/End: Complemental strand, 51200150 - 51200007
Alignment:
| Q |
834 |
ttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttatcataattctgtccagg |
933 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| ||| ||||||| || | |||||||||||||| | ||||||||||||| ||| | ||| |||| |
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|
| T |
51200150 |
ttttccttgatgaataacggcaatggtatcagcattctttattgtactcaaacggtgagctacaatcacagttgttcggtttaccattactctatccaat |
51200051 |
T |
|
| Q |
934 |
gtctcttgtactactctttcagattctgcatcaagggcacttgt |
977 |
Q |
| |
|
| ||||||||| | ||| |||||||| |||||||| |||||||| |
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| T |
51200050 |
gcctcttgtacaattctctcagattcagcatcaagcgcacttgt |
51200007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 3e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 49736043 - 49736448
Alignment:
| Q |
20 |
gaattctcagctttatcaaaccatcctacttccatgtgaattattttctcgaagcacattaaccggattctttttatcaatttagaaccagctgcagcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
49736043 |
gaattctcagctttatcaaaccatcctacttccatgtgaattattttctcaaagcacattaaccggatcctttttatcaacttagaaccagcaacagcaa |
49736142 |
T |
|
| Q |
120 |
aagagtatgaccttaacggatgaaaaatgaaagatgccacgctaagggaaacaaatattaatgcccaaaattttgagtctttacgaagttcatctgcagg |
219 |
Q |
| |
|
|| |||| ||||||||||| ||||||| ||| || ||||| |||| | | ||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
49736143 |
aaaagtaggaccttaacggctgaaaaacgaatgaagccacactaaagaacacaaacattaatgcccaaaaattcacatctttacgaagttcatctgcagg |
49736242 |
T |
|
| Q |
220 |
ctcaaaaaatgtatttatcattttggagatgagaaggcccagaataggtaacattgcaccatttactgttgctgccagagctcccatgagtaacaccggg |
319 |
Q |
| |
|
|||||| |||||||||||||| ||||||| | ||| |||||||||||| |||||| ||| |||||| |||||| |||| || ||||||| | ||||| |
|
|
| T |
49736243 |
ctcaaagaatgtatttatcatcttggagactaaaagtcccagaataggttgcattgctccaattactgctgctgctagagtcccaatgagtagcgccggg |
49736342 |
T |
|
| Q |
320 |
atttcaggcttgttaagataaacaaggagaaaaaatgggacatctcgagttttagtt---gatgatgcttttgctgaaggaacaacttcagaccctccta |
416 |
Q |
| |
|
||||||||||||||||||||| | || ||| ||||||||||||| |||| ||| || ||||||| ||||||||||| || ||||||| ||||| |
|
|
| T |
49736343 |
atttcaggcttgttaagataagcgagacgaagaaatgggacatctggagtcttacttttatgtgatgctgctgctgaaggaagaaattcagacactcctt |
49736442 |
T |
|
| Q |
417 |
ctagtg |
422 |
Q |
| |
|
|||||| |
|
|
| T |
49736443 |
ctagtg |
49736448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 818 - 980
Target Start/End: Original strand, 49736719 - 49736881
Alignment:
| Q |
818 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
917 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
49736719 |
tacctttttctactacttttccttggtgaataacggcaatgatatcagcattccttattgtgcttaggcggtgggctacaatgatcattgttcggtttat |
49736818 |
T |
|
| Q |
918 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgc |
980 |
Q |
| |
|
||||||||| || || ||||||||||| |||||||| || ||||| ||||||||||||||||| |
|
|
| T |
49736819 |
cataattctttctagcgtctcttgtaccactctttccgactctgcgtcaagggcacttgttgc |
49736881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 509 - 629
Target Start/End: Original strand, 49736460 - 49736580
Alignment:
| Q |
509 |
gactctcttccagagtctacaaagttttctagcttatccgagtcattatcaccaaactgttctgatgaatcctttttaatttcttgcaatctaatgagtt |
608 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | |
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| T |
49736460 |
gactctcttccagattctacaaatgtttctagcttatctgagtcattagcaccatgctgttctgatgaatcctttttaatttcttgcagcctaatgagct |
49736559 |
T |
|
| Q |
609 |
gactataagctccatcaggat |
629 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
49736560 |
gactataagctccatcaggat |
49736580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 934 - 977
Target Start/End: Original strand, 38566397 - 38566440
Alignment:
| Q |
934 |
gtctcttgtactactctttcagattctgcatcaagggcacttgt |
977 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
38566397 |
gtctcttgtactaccctttcagattttgcatcaagtgcacttgt |
38566440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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