View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-23 (Length: 742)
Name: R108-tnk148-23
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-23 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 51 - 424
Target Start/End: Complemental strand, 41551164 - 41550794
Alignment:
| Q |
51 |
aatttgagagtttttgacctttggtgaataataggaagcagtgtgagttcttcttgacactgattctattgttactgccttaaacaccaccattgcactg |
150 |
Q |
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| T |
41551164 |
aatttgagagtttttgacctttggtgaataataggaagcagtgtgagttcttcttgacactgattctattgttactgctttaaacac-accattgcactg |
41551066 |
T |
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| Q |
151 |
cacatttcggtcatggaagataacattgtttggtggttagaaaaaagatgcaatttatttcggtttgaagtgcacattattcttgcattgaaaatgacag |
250 |
Q |
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| T |
41551065 |
cacatttcggtcatggaagataacattgtttggaggttagaaaaa-gatgcaatttatt-cggtttgaagtgaacattatttttgcattgaaaatgacag |
41550968 |
T |
|
| Q |
251 |
tgtttcggaccagctaaagtatagatggtagttggaatacaatttggctatccaaaattctgccgcaagtaaaaaattcaatttggcgaatttgttgtaa |
350 |
Q |
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| T |
41550967 |
tgtttcggaccaactaaagtatagatggtagttggaatacaatttggctatccaaaattctgccgtaagtaaaaaattcaatttggcgaatttgttgtaa |
41550868 |
T |
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| Q |
351 |
ttgttttcctatgagtatgagactcattggtcgcggtgttcaatgtccaccaaattgtgcaatctgtgatagaa |
424 |
Q |
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| T |
41550867 |
tttttttcctatgagtatgagactcattggtcgtggtgttcaatgtccaccaaattgtgcaatctgtgatagaa |
41550794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 428 - 742
Target Start/End: Complemental strand, 41551510 - 41551194
Alignment:
| Q |
428 |
aattctttttgatggggacataaatagggaacaatctagaatattcattagctcttgaaaacggctatgtacacaaaatcatggtagcatgggttttaaa |
527 |
Q |
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| T |
41551510 |
aattctttttgatggggacataa-tagggaacaatctagaatattcattagctcttgaaaacggctatgtacacaaaatcatggtagcatgggttttaaa |
41551412 |
T |
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| Q |
528 |
aggttgaaggctttaactatacaatgcttggaaaacaagcctgc---aagttgttcacaaattctggtagcttaatcacttgcattggtcataacccaaa |
624 |
Q |
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| T |
41551411 |
agtttgaaggctttaactatacaatgcttggaaaacaagcctgctgcaagttgttcacaaattctggtagcttaatcacttgcattggtcataacccaaa |
41551312 |
T |
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| Q |
625 |
ctacgttttgcgtagctaccgtagtatatggagtgcaaagtttgttgtcctaagagtgtaaaaatggtgtattggttcgcgtgaaaacataaaggtttag |
724 |
Q |
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| T |
41551311 |
ctacgttttgcgtagctaccgtagtatatggagtgcaaagtttgttgtcctaagagtgtaaaaatggtgtattggttcgtgtgaaaacataaaggtttag |
41551212 |
T |
|
| Q |
725 |
accaaaaagggcgttatg |
742 |
Q |
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| T |
41551211 |
accaaaaagggcgttatg |
41551194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41551198 - 41551169
Alignment:
| Q |
1 |
ttatgatggttctgtgttgatgaaccactt |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41551198 |
ttatgatggttctgtgttgatgaaccactt |
41551169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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