View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-28 (Length: 734)
Name: R108-tnk148-28
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-28 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 35093682 - 35093993
Alignment:
| Q |
1 |
gtcttctttgttatcctcccgtgctgtaaatactcaggtgacgcgtatataaccattatttcacgagcaacatcctggtttatcactggtactaatccgt |
100 |
Q |
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| T |
35093682 |
gtcttctttgttatcctcccgtgctgtaaatactcaggtgacgcgtatataaccattatttcatgagcaacatcctggtttatcactggtactaatccgt |
35093781 |
T |
|
| Q |
101 |
agtcggttagtataggctctaatgactcgttcaatagaacatttgaggatttaagatgaccatgaggcgcaaccaagttcggcaactcctcgtatagata |
200 |
Q |
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| T |
35093782 |
agtcggttagtataggctctaatgactcgttcaatagaacatttgaggatttaagatgaccatgaggcgcaatcaagttcggcaactccttgtatagata |
35093881 |
T |
|
| Q |
201 |
ttcaatccctttcgctacacctttcactatcttcaacctgcttggccagtcaaggctttcctgtcctatagaatggtatcctgtattagatgtaaaagtt |
300 |
Q |
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| T |
35093882 |
ttcaatccctttcgctacacctttcactatcttcaacctgcttggccagtcaaggctttcctgtcctatagaatggtatcctgtattagatgtaaaagtt |
35093981 |
T |
|
| Q |
301 |
agttacactagt |
312 |
Q |
| |
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|||||||||||| |
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| T |
35093982 |
agttacactagt |
35093993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 317 - 549
Target Start/End: Original strand, 35092942 - 35093173
Alignment:
| Q |
317 |
atatatacgttaataagagcaccattagttggcgatgttcttaaac--aaaaaagaaggtatcgattcaacctcaatcaagtgcacttcaatatctcaaa |
414 |
Q |
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| T |
35092942 |
atatatacgttaataagagcaccattaattggcgatgttcttaaaacaaaaaaaaaaggtatcgattcaacctcaatcaagtgcacttcaatatctcaaa |
35093041 |
T |
|
| Q |
415 |
ttcattatttacattaacctcttgttctcctcaactctccaatatactaacctcacctctttaattacactgggnaattaaataaaacattgaaactaac |
514 |
Q |
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| T |
35093042 |
ttcattatttacattaagctcttgttctcctcaactctccaatatactaacctcacctctttaattacactggg-----aattaaaacattgaaactaac |
35093136 |
T |
|
| Q |
515 |
ccagcaacgtaatagagata--tgcatagatatgaac |
549 |
Q |
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| T |
35093137 |
ccagcaacgtaatagagatatttgcatagatatgaac |
35093173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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