View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-3 (Length: 960)
Name: R108-tnk148-3
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 758; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 163 - 960
Target Start/End: Original strand, 42638635 - 42639430
Alignment:
| Q |
163 |
caattgtagaacagtttgagaatctccacacactcggttgcaacatttgagtacaacatatttgtacactttgttccatcgtcacgaacaactttactgg |
262 |
Q |
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| T |
42638635 |
caattgtagaacagtttgagaatctccacacactcggttgcaacatttgagtacaacatatttgtacactttgttccatcatcacgaacaactttactgg |
42638734 |
T |
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| Q |
263 |
ctggtaaaattgtcagagacaaaacagtccctagtgacataaaagccataaaaccaatataagtgccatcgtttaaccgtagcagcttgatcaccacgat |
362 |
Q |
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| T |
42638735 |
ctggtaaaattgtcagagacaaaacagtccctagtgacataaaagccataaaaccaatataagtgccatcgtt-aaccgtagcagcttgatcaccacgat |
42638833 |
T |
|
| Q |
363 |
tgtaattaagaataaaaggaattaaaccaccaataaccccacccatattgaaaatactccagaaaattgaaatgtaagttcctttccgattcatgggtgg |
462 |
Q |
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| T |
42638834 |
tgtaattaagaataaaaggaattaaaccaccaataaccccacccatattgaaaatactccagaaaattgaaatgtaagttcctttacgattcatgggtgg |
42638933 |
T |
|
| Q |
463 |
ataagatgtcataatagcaccttgggcagaccataatagtccagctccgatgccgagaacagcgccggaaactacagcaaaagcttgatgttgtttatga |
562 |
Q |
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| T |
42638934 |
ataagatgtcataatagcaccttgggcagaccataatagtccagctccgatgccgagaacagcgccggaaactacagcaaaagcttgatgttgtttatga |
42639033 |
T |
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| Q |
563 |
ttgtagtagaggaatgaaccggtgtaaaggacataggaggaacaacctgcgaaaagagttaagtggggtccgaggatgttgtagatgccaccacctaggn |
662 |
Q |
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| T |
42639034 |
ttgtagtagaggaatgaaccggtgtaaaggacataggaggaacaacctgcgaaaagagttaagtggggtccgaggatgttgtagatgccaccacctagg- |
42639132 |
T |
|
| Q |
663 |
attccgaaaattgtgaagcttgtgtaaagtgcggttaaggcgttgttcgaagctgttgcattgacttgaccaccaccacccattcctgaaagagcattga |
762 |
Q |
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| T |
42639133 |
attccgaaaattgtgaagcttgtgtaaagtgcggttaaggcgttgttagaagctgttgcattgacttgaccaccaccacccattcctgaaagagcattga |
42639232 |
T |
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| Q |
763 |
acatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaggaggcgaattgtatcggacaagtgatgaagtttttgtggtttccggtgg |
862 |
Q |
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| T |
42639233 |
acatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaagaggcgaattgtatcggacaagtgatgaagtttttgtggttttcggtgg |
42639332 |
T |
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| Q |
863 |
ttgagtggctgattcttcatattcaacgacaccacccattgggaaattgtgaaagagtgaagatggtgaaagagagattcagaattggagatgaagaa |
960 |
Q |
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| T |
42639333 |
ttgagtggctgattcttcatattcaacgacaccacccattgggaaattgtgaaagagtgaagatggtggaagagagattcagaattggagatgaagaa |
42639430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 163 - 887
Target Start/End: Original strand, 42631491 - 42632216
Alignment:
| Q |
163 |
caattgtagaacagtttgagaatctccacacactcggttgcaacatttgagtacaacatatttgtacactttgttccatcgtcacgaacaactttactgg |
262 |
Q |
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||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
42631491 |
caattatagaacaatttaagaatctccacacactcagttgcaacatttgagtacaacatatttgtacactttgttccatcatcacgaacaactttactag |
42631590 |
T |
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| Q |
263 |
ctggtaaaattgtcagagacaaaacagtccctagtgacataaaagccataaaaccaatataagtgccatcgtttaaccgtagcagcttgatcaccacgat |
362 |
Q |
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| T |
42631591 |
ctggtaaaatagttagagacaaaacagtccctagtgacataaaagccataaaaccaatataagttccatcatt-aaccgtagcagcttgatcaccacgat |
42631689 |
T |
|
| Q |
363 |
tgtaattaagaataaaaggaattaaaccaccaataaccccacccatattgaaaatactccagaaaattgaaatgtaagttcctttccgattcatgggtgg |
462 |
Q |
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| T |
42631690 |
tgtaattaagaataaaaggaatcaacccaccaataacaccacccatgttgaaaatactccagaaaattgaaatgtaagttcctttacggttcatgggtgg |
42631789 |
T |
|
| Q |
463 |
ataagatgtcataatagcaccttgggcagaccataatagtccagctccgatgccgagaacagcgccggaaactacagcaaaagcttgatgttgtttatga |
562 |
Q |
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| T |
42631790 |
ataagatgtcataatagcaccttgtgcagcccataatagacctgctccgatgccgagaagggcaccggcaactatagcaaaagcttgatgttgtttatga |
42631889 |
T |
|
| Q |
563 |
ttgtagtagaggaatgaaccggtgtaaaggacataggaggaacaacctgcgaaaagagttaagtggggtccgaggatgttgtagatgccaccacctaggn |
662 |
Q |
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|| ||||| ||||| ||||| | ||| || ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42631890 |
ttatagtaaaggaaagaaccagcgtagagtacataagttgaacaacctgcgaaaagagttaagtgaggtccgaggatgttgtagatgccaccacctagg- |
42631988 |
T |
|
| Q |
663 |
attccgaaaattgtgaagcttgtgtaaagtgcggttaaggcgttgttcgaagctgttgcattgacttgaccaccaccacccattcctgaaagagcattga |
762 |
Q |
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|| || || | || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42631989 |
ataccaaacactgcaaaggttgtgtaaagtgcggttaaggcgttgttagaagctgttgcattgacttgaccaccaccacccattcctgaaagagcgttga |
42632088 |
T |
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| Q |
763 |
acatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaggaggcgaattgtatcggacaa---gtgatgaagtttttgtggtttccgg |
859 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||| |||| |||||||||| || || |||||||||||||||| ||||| || |
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| T |
42632089 |
acatgcctggacaacaaaaacaaactaagccaataaggattatttgtgaaagaggtgaattgtatctgaaaaggtgtgatgaagtttttgttgtttctgg |
42632188 |
T |
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| Q |
860 |
tggttgagtggctgattcttcatattca |
887 |
Q |
| |
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| T |
42632189 |
tgtttgagttcctgattctacattttca |
42632216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 42639426 - 42639594
Alignment:
| Q |
1 |
aagaatgaaaagcgaaagaaacaacaatttatggagttggagattgagatttgaccaccataatgtggaaaagtttgcagtaaatgcaattaaaaacatg |
100 |
Q |
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| T |
42639426 |
aagaatgaaaagagagagaaacaacaatttatggagttggagattgagatttgaccaccataatgtggaaaagtttgcagtaaatgcaattaaaaacatg |
42639525 |
T |
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| Q |
101 |
acaaatttggagttaagnnnnnnnnnacaagcgaaacattgtagctacatgcaacgttgtttcaattgt |
169 |
Q |
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| T |
42639526 |
acaaatttggagttaagtttttttttacaagcgaaacattgtagctacatgcaacgttgtttcaattgt |
42639594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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