View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-30 (Length: 508)
Name: R108-tnk148-30
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 197 - 508
Target Start/End: Complemental strand, 41551508 - 41551196
Alignment:
| Q |
197 |
ttctttttgatggggacataaatagggaacaatctagaatattcattagctcttgaaaacggctatgtacacaaaatcatggtagcatgggttttaaaag |
296 |
Q |
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| T |
41551508 |
ttctttttgatggggacataa-tagggaacaatctagaatattcattagctcttgaaaacggctatgtacacaaaatcatggtagcatgggttttaaaag |
41551410 |
T |
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| Q |
297 |
tttgaaggctttaactatacaatgcttggaaaacaagc---ctgcaagntggttcacaaattctggtagcttaatcacttgcattggtcataacccaaac |
393 |
Q |
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| T |
41551409 |
tttgaaggctttaactatacaatgcttggaaaacaagcctgctgcaagtt-gttcacaaattctggtagcttaatcacttgcattggtcataacccaaac |
41551311 |
T |
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| Q |
394 |
tacgttttgcgtagcctaccgtagtatatgnagtgcaaggtttgttgtcctaagagtg-naaaatggtgtatnggntcgcgngaaaacataanggtttag |
492 |
Q |
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| T |
41551310 |
tacgttttgcgtag-ctaccgtagtatatggagtgcaaagtttgttgtcctaagagtgtaaaaatggtgtattggttcgtgtgaaaacataaaggtttag |
41551212 |
T |
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| Q |
493 |
accaaaaggggcgtta |
508 |
Q |
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| T |
41551211 |
accaaaaagggcgtta |
41551196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 41551073 - 41550879
Alignment:
| Q |
1 |
ttgcactgcacatttcggtcatggaagataacattgtttggtggttagaaaaggatgcaatttattcggtttgaagtccacattatttttgcattgaaaa |
100 |
Q |
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| T |
41551073 |
ttgcactgcacatttcggtcatggaagataacattgtttggaggttagaaaaagatgcaatttattcggtttgaagtgaacattatttttgcattgaaaa |
41550974 |
T |
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| Q |
101 |
tgacagtgtttcggaccaactaaagtatagatggnagttggaatacaatttggctatccaaaattctgccgcaagnaaaaaattcaatttggcga |
195 |
Q |
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| T |
41550973 |
tgacagtgtttcggaccaactaaagtatagatggtagttggaatacaatttggctatccaaaattctgccgtaagtaaaaaattcaatttggcga |
41550879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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