View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-34 (Length: 393)
Name: R108-tnk148-34
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 96 - 393
Target Start/End: Original strand, 31811221 - 31811518
Alignment:
| Q |
96 |
gaattcaggtacccaacattgatgaacctaagaaatgttactacataaagttgtataggaacaaaacaaaacgattgttgtacaagcaaagctatgattg |
195 |
Q |
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| T |
31811221 |
gaattcaggtacccaacattgatgaacctaagaaatgttactacataaagttgtataggaacaaaacaaaacgattgttgtacaagcaaagctatgattg |
31811320 |
T |
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| Q |
196 |
attccagctacataaaataaaacagtaaaattggttcatcatatttttcacaaaattaaacagttttcagcgtagtacaagacgtgacagttcgttttgt |
295 |
Q |
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| T |
31811321 |
attccagctgcataaaataaaacagtaaaattggttcatcatatttttcacaaaattaaacagttttcagcgtagtacaagacgtgacagttcgttttgt |
31811420 |
T |
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| Q |
296 |
tattggcgaaaagaatagcaaattgagcantggtgggttcttctcccacttgctgctagtgtcaagttgcatcaaatatttgatttgtatgaacatag |
393 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31811421 |
tattggcgaaaagaatagcaaattgagcaatggtgggttcttctcccacttgctgctagtgtcaagttgcatcaaatatttggtttgtatgaacatag |
31811518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31811514 - 31811614
Alignment:
| Q |
1 |
catagatagatcaagagaacaagtaccattagcaatgtagaccctactgtaaaatgtttcttcatgttctcagtcaaacataacaccatccgtaagaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31811514 |
catagatagatcaagagaacaagtaccattagcaatgtagaccctactgtaaaatgtttcttcatgttctcagtcaaacataacaccatccgtaagaatt |
31811613 |
T |
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| Q |
101 |
c |
101 |
Q |
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| T |
31811614 |
c |
31811614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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