View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-5 (Length: 971)
Name: R108-tnk148-5
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-5 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 468 - 971
Target Start/End: Complemental strand, 5303292 - 5302799
Alignment:
| Q |
468 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttgtaccagagctacaaacacctaaattttat |
563 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||| |
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| T |
5303292 |
aagaaagagatctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagcgaacagatttataccaatgctacaaacacctaaattttat |
5303193 |
T |
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| Q |
564 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgaagccttaaaggtttc |
663 |
Q |
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|||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
5303192 |
accactcata----gttta-tgttgtattgatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaaatgtttt |
5303098 |
T |
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| Q |
664 |
ctcccctttttgggtgcggggaaataaaatatttggacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaac |
763 |
Q |
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|| | |||||||| ||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303097 |
cttctctttttggttgctgg----taatatatttg-acttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaac |
5303003 |
T |
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| Q |
764 |
caaatcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtannnnnn |
863 |
Q |
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| T |
5303002 |
caaatcatctaagtccaaattcattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtatttttt |
5302907 |
T |
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| Q |
864 |
nattaagaggtttttagacctatcgttgcctcagtattaacttcatctttctccagttgattatctcttcccacacccgcagcagcactatagccattca |
963 |
Q |
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| T |
5302906 |
tagtaagaggtttttagacctatcgttgcctcagtattagcttcatctttctccagttgattatctcttcccacacccacagcagcactatagccattca |
5302807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 5302791 - 5302684
Alignment:
| Q |
13 |
caaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5302791 |
caaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatg |
5302692 |
T |
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| Q |
113 |
gtcataga |
120 |
Q |
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| T |
5302691 |
gttataga |
5302684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 5303832 - 5303750
Alignment:
| Q |
174 |
aattgttggaattttgatgctactaaggaggtttaaggctgttgcttgattgataatcttgtataagctccaacattccttga |
256 |
Q |
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| T |
5303832 |
aattgttggaattttgatgctactaaggaggtttacggctgtttcttgattggtaatcttgtataagctctaacattccttga |
5303750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 468 - 857
Target Start/End: Complemental strand, 54728899 - 54728522
Alignment:
| Q |
468 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttgtaccagagctacaaacacctaaattttat |
563 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54728899 |
aagaaagagctctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
54728800 |
T |
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| Q |
564 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgaagccttaaaggtttc |
663 |
Q |
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|||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||| |
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| T |
54728799 |
accactcata----gttta-tgttgtattgatctatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaatgttttc |
54728705 |
T |
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| Q |
664 |
ctcccctttttgggtgcggggaaataaaatatttggacttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaac |
763 |
Q |
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|| | ||||||| ||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728704 |
ttctc-tttttggttgctg-----taatatatttg-acttacatacatctcatcatttttctttattcagccaccatctaattgcttcacatgtccaaac |
54728612 |
T |
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| Q |
764 |
caaatcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
857 |
Q |
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| T |
54728611 |
caaatcatctaagttcaaattcattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
54728522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 54728129 - 54727996
Alignment:
| Q |
13 |
caaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatg |
112 |
Q |
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| T |
54728129 |
caaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatg |
54728030 |
T |
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| Q |
113 |
gtcatagaaggagataaatgtcactatgtttgaa |
146 |
Q |
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| T |
54728029 |
gttatagaaggagataaatgttactatgtttgaa |
54727996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 877 - 967
Target Start/End: Complemental strand, 54728230 - 54728140
Alignment:
| Q |
877 |
ttagacctatcgttgcctcagtattaacttcatctttctccagttgattatctcttcccacacccgcagcagcactatagccattcacaaa |
967 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54728230 |
ttagacctatcgttgcctcagtattagcttcatctttctccagttgattatctcttcccacacccgcagcaacactatagccattcacaaa |
54728140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 54729441 - 54729359
Alignment:
| Q |
174 |
aattgttggaattttgatgctactaaggaggtttaaggctgttgcttgattgataatcttgtataagctccaacattccttga |
256 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
54729441 |
aattgttggaattttgatgctactaaggaggtttacggctgttgcttgattggtaatcttgtataagctctaacattccttga |
54729359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 480 - 555
Target Start/End: Complemental strand, 26588599 - 26588524
Alignment:
| Q |
480 |
tgatggctgaaggtctgatcaggttggtgtctgcccatgcaagccaacagatttgtaccagagctacaaacaccta |
555 |
Q |
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| T |
26588599 |
tgatggctaaaggtttaatcaggttggtgtctgctcattcaagtcagcagatttacaccagggctacaaacaccta |
26588524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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