View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk148-50 (Length: 261)
Name: R108-tnk148-50
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-50 |
 | |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 14849787 - 14849527
Alignment:
| Q |
1 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14849787 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
14849688 |
T |
|
| Q |
101 |
cgaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
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|
| T |
14849687 |
cgcagcatttggggggccaaaagagttgttagcgaaggatacaagtggagcattggttcaggaactgatatttgtgtatgggaccagcggtggctagtgg |
14849588 |
T |
|
| Q |
201 |
atgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
261 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14849587 |
atggtggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
14849527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 33133647 - 33133387
Alignment:
| Q |
1 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33133647 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
33133548 |
T |
|
| Q |
101 |
cgaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
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|
| T |
33133547 |
cgcagcatttggggggccaaaagagttgttagcgaaggatacaagtggagcattggttcaggaactgatatttgtgtatgggaccagcggtggctagtgg |
33133448 |
T |
|
| Q |
201 |
atgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
261 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33133447 |
atggtggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
33133387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 17810941 - 17811197
Alignment:
| Q |
1 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17810941 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatattttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
17811040 |
T |
|
| Q |
101 |
cgaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgg |
200 |
Q |
| |
|
|| |||||||| |||||| ||||||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
17811041 |
cgcagcatttgaggggcc--aagagttgttagtgaatgatacaagtggagcattggttcaggaactgatatttgtgtatgggaccaacgatggctagtgg |
17811138 |
T |
|
| Q |
201 |
atgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgtt |
259 |
Q |
| |
|
||| |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
17811139 |
atggtggtcttttacagaagccagaaagtttgccagaagaattcaaatagcttactgtt |
17811197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 11122294 - 11122554
Alignment:
| Q |
1 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11122294 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
11122393 |
T |
|
| Q |
101 |
cgaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgg |
200 |
Q |
| |
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|| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
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| T |
11122394 |
cgcaacatttggggggccaaaagagttgttagcgaaggatacaagtggagcattggttcaggaactgatatttgtgtatgggaccagcggtggctagtgg |
11122493 |
T |
|
| Q |
201 |
atgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
261 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11122494 |
atggtggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
11122554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 32020875 - 32020615
Alignment:
| Q |
1 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32020875 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
32020776 |
T |
|
| Q |
101 |
cgaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
32020775 |
cgcagcatttggggggccaaaagagttgttagcgaaggatacaagtggagcattggttcaggaactgatatttgtgtatgggaccagcggtggctagtgg |
32020676 |
T |
|
| Q |
201 |
atgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
261 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32020675 |
atggtggtgttctacagaagccagaaagtgtgccagaagaattcaaagagcttactgttgc |
32020615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 44000943 - 44001203
Alignment:
| Q |
1 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000943 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaattgtgatttcttgtactcaaagattggtcacaatccaagctacgtttgg |
44001042 |
T |
|
| Q |
101 |
cgaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
44001043 |
cgaagcatttggggggccaaaagagttgttagcgaaggatacaagtggagcattggttcaggaactgatatttgtgtatgggaccagcggtggctagtgg |
44001142 |
T |
|
| Q |
201 |
atgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
261 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44001143 |
atggtggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
44001203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 21104976 - 21104719
Alignment:
| Q |
2 |
gaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttggc |
101 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
21104976 |
gaaccgcacaacattgtcactagattattcaaagcaaaatactttaacaagtgtgatttcttagacgcaaagattagtcacaatccaagctacgtctggc |
21104877 |
T |
|
| Q |
102 |
gaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgga |
201 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
21104876 |
gcagcatttggggggccaaaagagttgttagcgaaggatacacatggagcattggttcaggtactgatatatttgtatgggaccaacgatggctagtgga |
21104777 |
T |
|
| Q |
202 |
tgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgtt |
259 |
Q |
| |
|
|| ||||||| ||||||||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
21104776 |
tggtggtgttttacagaagccaaaatggctgccagaagaattcaaagagcttactgtt |
21104719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 36304630 - 36304825
Alignment:
| Q |
12 |
acattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttggcgaagcattt- |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
36304630 |
acattgtcaccagatcgttcaaagcaaaatattttaacaaatgtgatttcttggactcaaagattggtcacagtccaagctacgtttggctcagcatttg |
36304729 |
T |
|
| Q |
111 |
----------ggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggcta |
196 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
36304730 |
gggggggggggggggggcaaaagagttgttagcgaagggtacaagtggagtattggttcaggtactgatatttgtgtatgggaccaacgatggcta |
36304825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 36306888 - 36306964
Alignment:
| Q |
177 |
tatgggaccaacgatggctagtggatgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgttgc |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36306888 |
tatgggaccaacgatggctagtggatggtggtgttctacagaagcca--------gccagaagaattcaaagagcttactgttgc |
36306964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 36304825 - 36304886
Alignment:
| Q |
120 |
aaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgg |
181 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
36304825 |
aaagagttgttagcgaaggatacaaatggagtattggttcaggtactgatatttgtgtatgg |
36304886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 12603235 - 12602977
Alignment:
| Q |
1 |
ggaaccacacaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttgg |
100 |
Q |
| |
|
|||||| ||||||| |||||| ||||| ||||||||||||||||||||||| |||| |||||||||| |||||||||||||| ||| ||||||||| ||| |
|
|
| T |
12603235 |
ggaaccgcacaacaatgtcactagattattcaaagcaaaatactttaacaagtgtggtttcttggacccaaagattggtcacgatctaagctacgtctgg |
12603136 |
T |
|
| Q |
101 |
cgaagcatttggggggccaaaagagttgtcagcgaaggatacaagtggagcattggttcaggaactggtatttgtgtatgggaccaacgatggctagtgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
12603135 |
cgaagcatttggggggccaaaagagttgttagcaaaggatacaaatggagcattggttcaagtactgatatatgtgtatgggaccaacgatggctagtgg |
12603036 |
T |
|
| Q |
201 |
atgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgtt |
259 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
12603035 |
atggtggtgttttacagaagccaaaaagtctttcagaagaattcaaaaagcttactgtt |
12602977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 16145434 - 16145349
Alignment:
| Q |
173 |
tgtgtatgggaccaacgatggctagtggatgatggtgttctacagaagccagaaagtctgccagaagaattcaaagagcttactgt |
258 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16145434 |
tgtgtttgggaccagcgatggctagtggatgatggtgttttacagaagtcagaaagtctgccagaagaattcaaagagcttactgt |
16145349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 10982325 - 10982220
Alignment:
| Q |
9 |
acaacattgtcaccagattgttcaaagcaaaatactttaacaaatgtgatttcttggactcaaagattggtcacaatccaagctacgtttggcgaagcat |
108 |
Q |
| |
|
||||||| ||||| ||||| |||||||| ||||| ||| ||||||||||| ||||| || | | ||| ||||||||||| ||||||||||| || || |
|
|
| T |
10982325 |
acaacatagtcactagattattcaaagccaaatattttccgaaatgtgattttttggattctaggtgtggacacaatccaagttacgtttggcgcagtat |
10982226 |
T |
|
| Q |
109 |
ttgggg |
114 |
Q |
| |
|
|||||| |
|
|
| T |
10982225 |
ttgggg |
10982220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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