View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-52 (Length: 254)
Name: R108-tnk148-52
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-52 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 11954199 - 11954452
Alignment:
| Q |
1 |
tgtaatccaataactcaatccttcaagaagttgccgattgggtcaattatgatttggcgtcttttaggaatgacaatgaatgggagtgcaggttacagag |
100 |
Q |
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| T |
11954199 |
tgtaatccaataactcaatccttcaagaagttgccgattgggtcaattaagatttggcgtcttttagggatgacaatgaatgtgagtgcaggctacagag |
11954298 |
T |
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| Q |
101 |
tcctaaaattgggatgtgatagaacatttgaaatttacgattcaataacgaagtgttggagccatctaaaaaagatacctatatgtattaaggagctaga |
200 |
Q |
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| T |
11954299 |
tcctaaaattgggatgtgatagaacatttgaaatttacgattcaataacgaagtgttggagccatctaaaaaagatacctatatgtattaagaagctaga |
11954398 |
T |
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| Q |
201 |
cgatactatttccaacattgtttccattgacaccactctttatttcaagcataa |
254 |
Q |
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| T |
11954399 |
cgatactatttccaacattgtttccattgacaccactctttatttcaagcataa |
11954452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 11980337 - 11980526
Alignment:
| Q |
1 |
tgtaatccaataactcaatccttcaagaagttgccgattgggtcaattatgatttggcgtcttttaggaatgacaatgaatgggagtgcaggttacagag |
100 |
Q |
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| T |
11980337 |
tgtaatccaatgactaaatccttcaagaagttgccgaatggttggattaagcggtggtgtcatttagggatgacaatgaatgggagtgcagactacaggg |
11980436 |
T |
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| Q |
101 |
tcctaaaattgggatgtgatagaacatttgaaatttacgattcaataacgaagtgttggagccatctaaaaaagatacctatatgtattaagg |
193 |
Q |
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| T |
11980437 |
tcctaaaattgggttg---tagaaaatatgaaatttacgattcagtaacaaaatgctggagtcatctaggaaagatacctgaatgtattaagg |
11980526 |
T |
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