View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-56 (Length: 168)
Name: R108-tnk148-56
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-56 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 6e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 6e-88
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 10538372 - 10538205
Alignment:
| Q |
1 |
aaatgtacatattccagtccttcaagtatgaaggtacatatatagtgacaaaacagcaagcatcaaggagtgatatttccttggtttgccctaattacaa |
100 |
Q |
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| T |
10538372 |
aaatgtacatattccagtccttcaagtatgaaggtacatatatattgacaaaacagcaagcatcaaggagtgatatttccttggtttgccctaattacaa |
10538273 |
T |
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| Q |
101 |
gctcttcagtggtggcaccaattatttcatttgctcttttcaatccaacacattgatatcgtcctata |
168 |
Q |
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| T |
10538272 |
gctcttcagtggtggcaccaattatttcatttgctcttttcaatccaacacattgatatcgtcctata |
10538205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 10586868 - 10586985
Alignment:
| Q |
1 |
aaatgtacatattccagtccttcaagtatgaaggtacatatatagtgacaaaacagcaagcatcaaggagtgatatttcc-ttggtttgccctaattaca |
99 |
Q |
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|||||||||| ||| || ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||| |||||||||| |
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| T |
10586868 |
aaatgtacattttctagctctttaagtatgaaggtacatat----tgacaaaacaacaagcatcaaggagtgatatttcctttattttgtcctaattaca |
10586963 |
T |
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| Q |
100 |
agctcttcagtggtggcaccaa |
121 |
Q |
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| T |
10586964 |
agctcttcagtggtagcaccaa |
10586985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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