View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-57 (Length: 200)
Name: R108-tnk148-57
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-57 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 10188167 - 10188356
Alignment:
| Q |
1 |
tctttctctctctacaaatacaaaaccctctcactcctcaagctcagagggccacactgcaaacnnnnnnnnnnnnnnnnnnnnatgagggaaggtggag |
100 |
Q |
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| T |
10188167 |
tctttctctctctacaaatacaaaaccctctcactcctcaaactcagagggccacactgcaaa----------agagagagagaatgagggaaggtggag |
10188256 |
T |
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| Q |
101 |
gaagaagaggaacatcaaagctaagagaagtagcacggaaaattgttgttgttgcagcagcatatgcatgtgcttcattctcaagaagaaaaacnttggt |
200 |
Q |
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| T |
10188257 |
gaagaagaggaacatcaaagctaagagaagtagcaaggaaaattgttgttgttgcagcagcatatgcatgtgcttcattctcaagaagaaaaacattggt |
10188356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 9818705 - 9818636
Alignment:
| Q |
85 |
atgagggaaggtggaggaagaagaggaacatcaa---agctaagagaagtagcacggaaaattgttgttg |
151 |
Q |
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| T |
9818705 |
atgaggtaatgtggaggaagaagaggaacatcaaattagctaagagaagtagcaaggaaagttgttgttg |
9818636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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