View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-7 (Length: 1127)
Name: R108-tnk148-7
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 720; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 261 - 1127
Target Start/End: Original strand, 7158001 - 7158888
Alignment:
| Q |
261 |
aattcttatgtgtatttataatcttaacatctcacaggaggactgtgaagaaaaagtttcctgtgttattatgtgaacttcttaattgaaccattagcct |
360 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7158001 |
aattcttgtgtgtatttataatcttaacatctcacaggaggactgtgaagaaaaagtttcctgtgttattatgtgaacttcttaattgaaccattagcct |
7158100 |
T |
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| Q |
361 |
aaatggtcgtggaagataagtactggtcaccagactcacgaatacatccctggcaaaaattgcttagatgtccttacatcttcttctccacggatcaggt |
460 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7158101 |
aaatggccgtggaagataagtactggtcaccagactcaccaatacatccctagaaaaaattgcttagatgtccttacatcttcttctccacggatcaggt |
7158200 |
T |
|
| Q |
461 |
agctcccgttattttcctcttttcctcctcctgcaccaatactcttttcttttatatctttggtctccacctcctcatcctcctctctatttgcgccacc |
560 |
Q |
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| T |
7158201 |
aactcccgttattttcctcttttcctcttcctgtaccaatactcttttcttttatatctttggtctccacctcctcatcctcctctctatttgcgccacc |
7158300 |
T |
|
| Q |
561 |
ccccgttgacacagtgcctccacatggacatcaacaaggtggggcagcaggtggctttgttctcccaacaataaagaattgttttaactcccttgaatcg |
660 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7158301 |
tcccgttgacacagtgcctccacatggacatcaacaaggtggggcagcaggtggctttgttctcccaacaataaagaattgttttaactcccttgaatcg |
7158400 |
T |
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| Q |
661 |
aagatgaagcaggggaaggtattgaaaccaaatcagaatgtgctgatgttgacacaaccaggattctcagagaccctcactttggatgccaaatccatat |
760 |
Q |
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| T |
7158401 |
aagatgaagcaggggaaggtattgaaaccaaatcagaatgtgctgatgttgacacaaccaggcttctcagagaccctcactttggatgccaaatccatat |
7158500 |
T |
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| Q |
761 |
tgca--nnnnnnnnnnacaatctgtatctctagtggccgcataaaat-----------agcaaacgcttcaatatcttaaatactacatcgagccactta |
847 |
Q |
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| T |
7158501 |
tgcattttttttttttacaatctgtatctctagtggccgcataaaatacaactttctcagcaaaagcttcaatatcttaaatactacatcgagccactta |
7158600 |
T |
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| Q |
848 |
aatactccaccaaacattttatactactcgatgtagggcttaggcatccgatagtaaccaagtccctattagacaatcacaaggagaatgaagggaatga |
947 |
Q |
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| T |
7158601 |
aatactccaccaaacattttatactactcgatgcaggccttaggcatccgatagtaaccaagtccctattagacaatcacaaggagaatgaagggaatga |
7158700 |
T |
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| Q |
948 |
ctcaacattgaaacaacaaatgaaatctctgaacagatga--------tagtgatataatttagcttactaacaaggctttggcaccctcttggatcagt |
1039 |
Q |
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| T |
7158701 |
ctcaacattgaaacaacaaatgaaatctctgaacagatgatagtgaattagtgatataatttagcttactaacaaggctttggcaccctcttggatcagt |
7158800 |
T |
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| Q |
1040 |
aaatgggcctcctttccagggaggagttcatggaagagtcagcaattttacagtctaacatgccagttcccttgagaatgtcgaatac |
1127 |
Q |
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| T |
7158801 |
aaatgggcctcctgtccagggaggagttcatggaagagtcagcaattttacagtctaacatgccagttcccttgagaatgtcggatac |
7158888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 7158912 - 7159156
Alignment:
| Q |
20 |
accagtgagattgagattgtttgtaacaacctcaatgcatataatctttattgttccagcttgaggggagcgttggagttctaagtattgaacccataag |
119 |
Q |
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| T |
7158912 |
accagtgagattgagattatttgtaacaacctcaatgcatataatctttattgttccagcttgaggggactgttggagttctaagtattgaacccataag |
7159011 |
T |
|
| Q |
120 |
cccattagtgtatttgtaaatatattcttgtaatctctcaccgcaggtggtggagttctcgactgaacaagcacaggcacaccatctgaacccagtccta |
219 |
Q |
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| T |
7159012 |
cccattagtgtatttgtaaatatattcttgtaatctctcaccgcaggtggtggagttctcgactgaacaagcacaggcacaccatctgaacccagtccta |
7159111 |
T |
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| Q |
220 |
atgttatgaataacaatgccaatagaaaataaacttgccccaatt |
264 |
Q |
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| T |
7159112 |
atgttatgaataacaatgccaatagaaaataaacttgccccaatt |
7159156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 7179653 - 7179744
Alignment:
| Q |
162 |
gcaggtggtggagttctcgactgaacaagcacaggcacaccatctgaacccagtcctaatgttatgaataacaatgccaatagaaaataaac |
253 |
Q |
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| T |
7179653 |
gcaggtggtggagttcttgactgaacaagtgcaggcacaccatctgaacccagtcctattgttatgaataacaatgccgacagaaaataaac |
7179744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 24798093 - 24798007
Alignment:
| Q |
178 |
tcgactgaacaagcacaggcacaccatctgaacccagtcctaatgttatgaataacaatgccaatagaaaataaacttgccccaatt |
264 |
Q |
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| T |
24798093 |
tcgacttaacaagcgcacgcacaccatctgaacccaacactaatgttatggataacaatgccgatagaaaataaacttgcccaaatt |
24798007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 24725940 - 24725859
Alignment:
| Q |
174 |
gttctcgactgaacaagcacaggcacaccatctgaacccagtcctaatgttatgaataacaatgccaatagaaaataaactt |
255 |
Q |
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| T |
24725940 |
gttctcgaatgaacaagcgcatgctcaccatctgaacccaacactaatgttatgaataacaatgccgatagaaaataaactt |
24725859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 841 - 881
Target Start/End: Original strand, 35067422 - 35067462
Alignment:
| Q |
841 |
ccacttaaatactccaccaaacattttatactactcgatgt |
881 |
Q |
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| T |
35067422 |
ccacttaaatactccaccaaacatcctatactactcgatgt |
35067462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 916
Target Start/End: Complemental strand, 37483169 - 37483092
Alignment:
| Q |
839 |
agccacttaaatactccaccaaacattttatactactcgatgtagggcttaggcatccgatagtaaccaagtccctat |
916 |
Q |
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| T |
37483169 |
agccacttaaatactccaccaaacatcccatactacttgatgtggaacttgggcaccccataatacccaagtccctat |
37483092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 846 - 916
Target Start/End: Original strand, 28489108 - 28489178
Alignment:
| Q |
846 |
taaatactccaccaaacattttatactactcgatgtagggcttaggcatccgatagtaaccaagtccctat |
916 |
Q |
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| T |
28489108 |
taaatattcaaccaaacatctcatactacttgatgtaggacttagacatcccataatatccaagtccctat |
28489178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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