View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk148-8 (Length: 1128)
Name: R108-tnk148-8
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk148-8 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 382
Target Start/End: Original strand, 14264710 - 14265078
Alignment:
| Q |
15 |
caatcaatagagcttagaaaataaaaggagtggaaaagaattgtttttgttttgagaatgtttaattgcttaatttcgtgaatggtaggattcaccaaca |
114 |
Q |
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| T |
14264710 |
caatcaatagagcttagaaaataaaaggagtggaaaagaattgtttttgttttgagaatgtttaatcgcttaatttcgtgaatggtaggattcaccaaca |
14264809 |
T |
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| Q |
115 |
tatatgtttctaacttaggtcatttgcttaactaaagtgaatgagaagagcactactgtattctcagggcggtgtttactatgtgagattatatgttatg |
214 |
Q |
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| T |
14264810 |
tatatgtttctaacttaggtcatttgctcaactaaagtgaatgagaagagcagtactgtattctcagggcggtgtttactatgtgagattatatgttatg |
14264909 |
T |
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| Q |
215 |
-tttttatttgacaaagcatgtccgtacatacatggtgacctctagaagttacatttgccataaggaactccctagtatcttcatttgtttacagaacaa |
313 |
Q |
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| T |
14264910 |
ttttttatttgacaaagcatgtccttacatacatggtgacctctagaagttacatttgccataaggaactccctagtatcttcatttgcttacagaacaa |
14265009 |
T |
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| Q |
314 |
tctactgataactcttgactaaattcctagagctaaaagtaaaaatcatggttcaaatgtttagcttga |
382 |
Q |
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| T |
14265010 |
tctactgataactcttgactaaattcctagagctaaaagtaaaaatcatggttcaaatgtttagcttga |
14265078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 584 - 737
Target Start/End: Complemental strand, 14379244 - 14379089
Alignment:
| Q |
584 |
tatcatcggacaaaataacattcaagtggattgaaaaattgctctccaaaagtggccataat--gtaagatgtagcacgacaaagagatcatacgacgat |
681 |
Q |
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| T |
14379244 |
tatcaacggacaaaataacatacaaatagattgaaaaaaagctctccaaaattgcatgtaatatgtaagatgtagcacgatagagaggtcttgcgacaag |
14379145 |
T |
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| Q |
682 |
gaacacaaattcagtgtgtgtttttcttgagtaggttcaaggtggccggaaacagc |
737 |
Q |
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| T |
14379144 |
taacacaaattcagtgtttgtttttcttgagcaagttcaaggtggtcggaaacagc |
14379089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 14379428 - 14379379
Alignment:
| Q |
345 |
gctaaaagtaaaaatcatggttcaaatgtttagcttgatctcttcttttg |
394 |
Q |
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| T |
14379428 |
gctaaaagtaaaaatcatggttcaaatgtttagcttgatctcttcttttg |
14379379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 14263599 - 14263688
Alignment:
| Q |
1 |
attgttgttgtgctcaatcaatagagcttagaaaataaaa-ggagtggaaaagaattgtttttgttttgagaatgtttaattgcttaatttc |
91 |
Q |
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| T |
14263599 |
attgttgttgtgctcaat-aatagaacttagaaaataaaagggatttgaaaa-aattgtgtttgttttgagaattttttatcacttaatttc |
14263688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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