View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk176-2 (Length: 819)
Name: R108-tnk176-2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk176-2 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9526249 - 9526000
Alignment:
| Q |
1 |
catttatgaaattgctagaagagattaatagtgtagtttctaaaa-ggcattggaatgtggtaatgtgaaggggattgcactaaaagggtctaagattga |
99 |
Q |
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| T |
9526249 |
catttatgaaattgctagaagagattaatagtgtagtttctaaaaaggcattggaatgtggtaatgtgaaggggattgcactaaaagggtctaagattga |
9526150 |
T |
|
| Q |
100 |
tgtaatttcaggtgctgaattggaaattagtgagataaagaagttgtcttcatgctcttgttgatgttgttatttaatgattaattaagttgtatttgat |
199 |
Q |
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| T |
9526149 |
tgtaatttcaggtgctgaattggaaattagtgagataaagaagttgtcttcatgctcttgttgatgttgttatctaatgattaattaagttgtatttgat |
9526050 |
T |
|
| Q |
200 |
tttgaagtttggg--------aaaaaaggagtgtgacaagtacatatatg |
241 |
Q |
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| T |
9526049 |
tttgaagtttggggaaaaaaaaaaaaaggagtgtgacaagtacatatatg |
9526000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 672 - 819
Target Start/End: Complemental strand, 9526392 - 9526245
Alignment:
| Q |
672 |
aattgtgatcatgctagttggtaacaaaggtgaccttgttgacttgagaatggttcctactgaagatgcagttgagtttgcagaagaccaaggtttattc |
771 |
Q |
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| T |
9526392 |
aattgtgatcatgctagttggtaacaaaggtgaccttgttgatttgagaatggtccctactgaagatgcagttgagtttgcagaagaccaaggtttattc |
9526293 |
T |
|
| Q |
772 |
ttctcagagacttcagctcttactggtgtgaatgtggagggtgcattt |
819 |
Q |
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| T |
9526292 |
ttctcagagacttcagctcttactggtgtgaatgtggagggtgcattt |
9526245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 490 - 675
Target Start/End: Complemental strand, 9525832 - 9525653
Alignment:
| Q |
490 |
ttaaaatgtacatgttgacttgtgccttgttggtagagtggtggtgaataaaccaattcacttatctacaatcgaataaaggttagggttcaatttggca |
589 |
Q |
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| T |
9525832 |
ttaaaatctacatgttgacttgtgccttattgatagagtggtggtgaataaaccaattcacttatccacaatcgaa-gatgcataagaataaatt----c |
9525738 |
T |
|
| Q |
590 |
accatgtaaacaaatggatttaatccagatggataacaatgaaattcatggtccagctgttccacaaaggtgatcttgaaagaatt |
675 |
Q |
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| T |
9525737 |
atgatggaaacaaatggatttaatccagatggataacaat-aaattcatggtccagttgttccgcaaagatgatcttgaaagaatt |
9525653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 490 - 675
Target Start/End: Original strand, 24607703 - 24607882
Alignment:
| Q |
490 |
ttaaaatgtacatgttgacttgtgccttgttggtagagtggtggtgaataaaccaattcacttatctacaatcgaataaaggttagggttcaatttggca |
589 |
Q |
| |
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||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| | | || | | |||| |
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| T |
24607703 |
ttaaaatctacatgttgacttgtgccttattgatagagtggtggtgaataaaccaattcacttatccacaatcgaa-gatgcataagaataaatt----c |
24607797 |
T |
|
| Q |
590 |
accatgtaaacaaatggatttaatccagatggataacaatgaaattcatggtccagctgttccacaaaggtgatcttgaaagaatt |
675 |
Q |
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| T |
24607798 |
atgatggaaacaaatggatttaatccagatggataacaat-aaattcatggtccagttgttccgcaaagatgatcttgaaagaatt |
24607882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 283 - 388
Target Start/End: Complemental strand, 9525998 - 9525895
Alignment:
| Q |
283 |
atttcatatggtcttgctttatgtgctaagaactgaatagttggttatcatgtttcattgtgactatgatttattacatttataactcatctacaatatt |
382 |
Q |
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| T |
9525998 |
atttcatctggtcttgctttctgtgctaagaactgaat-gttg-ttatcatgtttcattgtgattattacttgtgacatttataactcatctacaatatt |
9525901 |
T |
|
| Q |
383 |
cattaa |
388 |
Q |
| |
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|||||| |
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|
| T |
9525900 |
cattaa |
9525895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 283 - 388
Target Start/End: Original strand, 24607537 - 24607640
Alignment:
| Q |
283 |
atttcatatggtcttgctttatgtgctaagaactgaatagttggttatcatgtttcattgtgactatgatttattacatttataactcatctacaatatt |
382 |
Q |
| |
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| T |
24607537 |
atttcatctggtcttgctttctgtgctaagaactgaat-gttg-ttatcatgtttcattgtgattattacttgtgacatttataactcatctacaatatt |
24607634 |
T |
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| Q |
383 |
cattaa |
388 |
Q |
| |
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|||||| |
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| T |
24607635 |
cattaa |
24607640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 506 - 653
Target Start/End: Original strand, 11450615 - 11450760
Alignment:
| Q |
506 |
gacttgtgccttgttggtagagtggtggtgaataaaccaattcacttatctacaatcgaataaaggttagggttcaatttggcaaccatgtaaacaaatg |
605 |
Q |
| |
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||||| |||||| ||| ||||||||| |||||||||||||||||| |||| ||||||||| ||| | | ||| ||||||||||||| | | ||||| |
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| T |
11450615 |
gacttatgccttattgatagagtggtagtgaataaaccaattcacatatccacaatcgaagaaaagat-cggtctggtttggcaaccatggagaaaaatg |
11450713 |
T |
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| Q |
606 |
gatttaatccagatggataacaatgaaattcatggtccagctgttcca |
653 |
Q |
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| T |
11450714 |
gatttaatccaaatggagaacaa-caagttcatggtccagctgttcca |
11450760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 599 - 675
Target Start/End: Original strand, 16939700 - 16939775
Alignment:
| Q |
599 |
acaaatggatttaatccagatggataacaatgaaattcatggtccagctgttccacaaaggtgatcttgaaagaatt |
675 |
Q |
| |
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||||||||||||||| | ||||||||||| ||||||||||| || || ||| |||||||||||| |||||||||| |
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| T |
16939700 |
acaaatggatttaattccaatggataacaac-aaattcatggttcaacttttcaacaaaggtgatcatgaaagaatt |
16939775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 599 - 675
Target Start/End: Original strand, 17010365 - 17010440
Alignment:
| Q |
599 |
acaaatggatttaatccagatggataacaatgaaattcatggtccagctgttccacaaaggtgatcttgaaagaatt |
675 |
Q |
| |
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| T |
17010365 |
acaaatggatttaattccaatggataacaac-aaattcatggttcaacttttcaacaaaggtgatcatgaaagaatt |
17010440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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