View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk176-6 (Length: 380)
Name: R108-tnk176-6
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk176-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 170 - 380
Target Start/End: Original strand, 21442266 - 21442476
Alignment:
| Q |
170 |
gaattctttgctaaaactcctattaactaacattgaagtaccgaccgagctaacacactttataatccattttctccatctagagagaaaattcattccc |
269 |
Q |
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| T |
21442266 |
gaattctttgctaaaactcctattaactaatattgaagtaccgaccgagctaacacactttataatccattttctccatctagagagaaaattcattccc |
21442365 |
T |
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| Q |
270 |
ttcattgtcgaatctatgtccccttatcaactaaattataaatcttttcaaagacaaatttgagtcaaataagttatctttaactttacttagattcatc |
369 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |
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| T |
21442366 |
ttcattgtcgaatctatgtctccttatcaactaaatcataagtcttttcaaagacaaatttgaataaaataagttatctttaacttttcttagattcatc |
21442465 |
T |
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| Q |
370 |
aacggnctcat |
380 |
Q |
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||||| ||||| |
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| T |
21442466 |
aacggtctcat |
21442476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 21442472 - 21442646
Alignment:
| Q |
1 |
ctcattagcaataaaaatatcactcaaagtttgtcganntttaacaaacgtcaaatgaggttttgataattacaagaccaatagttgacaaataaaataa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21442472 |
ctcattagcaataaaaatatcattcaaagtttgtcgatttttaacaaacgtcaaatgaggtttcgataattacaagaccaatagttgacaaataaaataa |
21442571 |
T |
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| Q |
101 |
agtagtagatatatctcgtgtatccgcaatttcttttttcaaatagatttgtcnnnnnnntttcagtttgaattc |
175 |
Q |
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| T |
21442572 |
agtagtagatatatctcgtgtatccgcaatttctttttttaaatagatttgtcaaataattttcagtttgaattc |
21442646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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