View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk23-10 (Length: 425)
Name: R108-tnk23-10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk23-10 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 22690503 - 22690081
Alignment:
| Q |
1 |
tctagagcattgtcttgaagtttcaaattaaatgtcatgttttcccgtaaaaaagatgcctatctactcaccagattctattacacaaaactccaagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22690503 |
tctagagcattgtcttgaagtttcaaattaaatgtcatgttttcccgtaaaaaagatgcctatctactca-cagattctattacacaaaactccaagctt |
22690405 |
T |
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| Q |
101 |
cttctgaggtgaacgtgccaaagaagctagatgcagttgctggaacgaaatcagtc----tatgatcaacattttgattgggtattgttgtggaacatcg |
196 |
Q |
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| T |
22690404 |
cttctgaggtgaacgtg-caaagaagctagatgcagttgctggaacgaaatcagtcgaataatgatcaacattttgatt-ggtattgttgtggaacatcg |
22690307 |
T |
|
| Q |
197 |
ctagaattatccatagataccaagttcctcgctttctttattttcttcttctttgggtatcagacctgaggg-aaaaaatggacagaaaagtgaaaccag |
295 |
Q |
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| T |
22690306 |
ctagaattatccatagata-caagttcctcgctttctttgatttcttcttcttt-ggtatcagacctgagggaaaaaaatggacag-aaagtgaaaccag |
22690210 |
T |
|
| Q |
296 |
tacttaatacttagacaaggaaaacgtnnnnnnnnnnnntgaattataaatacaagcatacacgcatggagcaacatacgctatttgtttaacaaattgt |
395 |
Q |
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|||||||||||||||||||| ||| || ||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||| |
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| T |
22690209 |
tacttaatacttagacaagg-aaatgtaaaaatataaaatgaatgataaatacaagcatggagtgatggagcaacatacactatttgtttaacaaattgt |
22690111 |
T |
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| Q |
396 |
cccctaacacgtggccgctgatccgccaat |
425 |
Q |
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| T |
22690110 |
cccctaacacgtggccgctgatctgccaat |
22690081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 22721921 - 22721520
Alignment:
| Q |
1 |
tctagagcattgtcttgaagtttcaaattaaatgtcatgttttcc-cgtaaaaaagatgcctatctactcaccagattct---attacacaaaactccaa |
96 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |
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| T |
22721921 |
tctagagcattgtcttgaagtttcaaattgaatgtcatgtttttcacgtaaaaaagatgcctacctactcac-agattcttctattacacaaaactccaa |
22721823 |
T |
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| Q |
97 |
gcttcttctgaggtgaacgtgccaaagaagctagatgcagttgctggaacgaaatcagtcta----tgatcaacattttgattgggtattgttgtggaac |
192 |
Q |
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| T |
22721822 |
gcttcttccgaggtgaacgtgcagagaaaactagatgcagttactggaacaaaatcagtcgaataatgatcaccattt------------gttgtggaac |
22721735 |
T |
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| Q |
193 |
atcgctagaattatccatagataccaagttcctcgctttctttattttcttcttctttgggtatcagacctga-gggaaaaaatggacagaaaagtgaaa |
291 |
Q |
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|||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
22721734 |
atcgctagaattattcatagatac-aagttcctcactttctttattttcttcttcttt-ggtatcagacctgaggggaaaaaatggacag-aaagtgaaa |
22721638 |
T |
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| Q |
292 |
ccagtacttaatacttagacaaggaaaacgtnnnnnnnnnnnntgaattataaatacaagcatacacgcatggagcaacatacgctatttgtttaacaaa |
391 |
Q |
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| T |
22721637 |
ctagtagttaatacttagacaagg-aaacataaaaatataaaacgaatgataaatacaa--------gcatggagcaacatacagtatttgtttaacaaa |
22721547 |
T |
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| Q |
392 |
ttgtcccctaacacgtggccgctgatc |
418 |
Q |
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| T |
22721546 |
ttgtcccctaacatgtggccgctgatc |
22721520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 40 - 418
Target Start/End: Complemental strand, 22749522 - 22749168
Alignment:
| Q |
40 |
ttttcccgtaaaaaagatgcctatctactcaccagattct---attacacaaaactccaagcttcttctgaggtgaacgtgccaaagaagctagatgcag |
136 |
Q |
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| T |
22749522 |
ttttcacgtagaaaagatgcctacctactcac-agattcttctattacacaaaactccaagcttcttctggggtgaacgtgc-aaagaagctagatgcag |
22749425 |
T |
|
| Q |
137 |
ttgctggaacgaaatcagtctatgatcaacattttgattgggtattgttgtggaacatcgctagaattatccatagataccaagttcctcgctttcttta |
236 |
Q |
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| T |
22749424 |
t--------cagaataa-----tgatcagcattttgattgg-tattgttgtggaacatcgctagaattattcatagatac-aagttcctcgctttcttta |
22749340 |
T |
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| Q |
237 |
ttttcttcttctttgggtatcagacctga-gggaaaaaatggacagaaaagtgaaaccagtacttaatacttagacaaggaaaacgtnnnnnnnnnnnnt |
335 |
Q |
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| T |
22749339 |
ttttcttcttcttt-ggtatcagacctgaggggaaaaaatggacag-aaagtgaaactagtagttaatacttagacaagg-aaacataaaaatataaaac |
22749243 |
T |
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| Q |
336 |
gaattataaatacaagcatacacgcatggagcaacatacgctatttgtttaacaaattgtcccctaacacgtggccgctgatc |
418 |
Q |
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|||| |||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22749242 |
gaatgataaatacaa--------gcatggagcaacatacactatttgtttaacaaattatcccctaacacgtggccgctgatc |
22749168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 22768479 - 22768414
Alignment:
| Q |
353 |
atacacgcatggagcaacatacgctatttgtttaacaaattgtcccctaacacgtggccgctgatc |
418 |
Q |
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||||| |||| ||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
22768479 |
atacaagcatcgagcaacatacactatttgtttaacaaattttcccctaacaagtggccgttgatc |
22768414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 22923452 - 22923517
Alignment:
| Q |
353 |
atacacgcatggagcaacatacgctatttgtttaacaaattgtcccctaacacgtggccgctgatc |
418 |
Q |
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| T |
22923452 |
atacaagcatggagaaacatacactgtttgtttaacaaattgtcccttgacacgtggtcgttgatc |
22923517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 22928105 - 22928170
Alignment:
| Q |
353 |
atacacgcatggagcaacatacgctatttgtttaacaaattgtcccctaacacgtggccgctgatc |
418 |
Q |
| |
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||||| |||||||| ||||||| || |||||||||||||||||||| | |||||||| || ||||| |
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| T |
22928105 |
atacaagcatggagaaacatacactgtttgtttaacaaattgtcccttgacacgtggtcgttgatc |
22928170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 22984384 - 22984449
Alignment:
| Q |
353 |
atacacgcatggagcaacatacgctatttgtttaacaaattgtcccctaacacgtggccgctgatc |
418 |
Q |
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||||| |||||||| ||||||| || |||||||||||||||||||| | |||||||| || ||||| |
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| T |
22984384 |
atacaagcatggagaaacatacactgtttgtttaacaaattgtcccttgacacgtggtcgttgatc |
22984449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 22997972 - 22998037
Alignment:
| Q |
353 |
atacacgcatggagcaacatacgctatttgtttaacaaattgtcccctaacacgtggccgctgatc |
418 |
Q |
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||||| |||||||| ||||||| || |||||||||||||||||||| | |||||||| || ||||| |
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| T |
22997972 |
atacaagcatggagaaacatacactgtttgtttaacaaattgtcccttgacacgtggtcgttgatc |
22998037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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