View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R108-tnk478-10 (Length: 357)
Name: R108-tnk478-10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk478-10 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 158 - 357
Target Start/End: Original strand, 8761824 - 8762023
Alignment:
| Q |
158 |
aattgtgttgaaatcaacctcattagtgaaagtagagccattatacttctgcacattttccacaacatttccatttaatttatgttgaggaaattgtcta |
257 |
Q |
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| T |
8761824 |
aattgtgttgaaatcaacctcattagtgaaagtagaaccattatacttctgcacattttccacaacatttccatttaatttatgttgaggaaattgtcta |
8761923 |
T |
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| Q |
258 |
ttctttgaaacatttccttcattattaactgatcctgctagaaactctcttccactccctcccctaatatcagaaatagaatccagaccaaaccctcctt |
357 |
Q |
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| T |
8761924 |
ttctttgaaacatttccttcattattaactgatcctgctagaaactctcttccactccctcccctaatatcagaaatagaatccagaccaaaccctcctt |
8762023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 158 - 357
Target Start/End: Original strand, 8788371 - 8788570
Alignment:
| Q |
158 |
aattgtgttgaaatcaacctcattagtgaaagtagagccattatacttctgcacattttccacaacatttccatttaatttatgttgaggaaattgtcta |
257 |
Q |
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| T |
8788371 |
aattttgttgaactcaacctcattagtgaaagtagaatcattaaacttttgctcattttccacaacatttccatctaatttatgctgaggaaattgtcta |
8788470 |
T |
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| Q |
258 |
ttctttgaaacatttccttcattattaactgatcctgctagaaactctcttccactccctcccctaatatcagaaatagaatccagaccaaaccctcctt |
357 |
Q |
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| T |
8788471 |
ttctttgaaacatttccttcattattaactgatcctgctggaaactctcttccactccctcccctaatatcaaaaatagaatccagacgaaacactcctt |
8788570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 8762024 - 8762184
Alignment:
| Q |
1 |
gaaccaaaccaaaattttcatccacaaaagatctacaattcttattttcattttgacccctttcgttgaagcaaaaactattgttatttgcacttaaacc |
100 |
Q |
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| T |
8762024 |
gaaccaaaccaaaattttcattcacaaaagatctacaattcttattttcattttgaccccttttgttgaagaaaaaactattgttatttgcactagaatc |
8762123 |
T |
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| Q |
101 |
ccttaatccattattcatagttccaattccaaccatttctgctacattattcagctgaatt |
161 |
Q |
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| T |
8762124 |
ccttaatccattattcatagttccaattccaaccatttctgctctattattcagctgaatt |
8762184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 8788571 - 8788715
Alignment:
| Q |
1 |
gaaccaaaccaaaattttcatccacaaaagatctacaattcttattttcattttgacccctttcgttgaagcaaaaactattgttatttgcacttaaacc |
100 |
Q |
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| T |
8788571 |
gaaccaaaccaaaattttcattcacaaaagatctaaaattcatattttcattttgactcctttc---------------attgttattttcact-agagc |
8788654 |
T |
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| Q |
101 |
ccttaatccattattcatagttccaattccaaccatttctgctacattattcagctgaatt |
161 |
Q |
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| T |
8788655 |
ccttaatccattgttcatagttccaattccaaccatttctgctccattattcagctgaatt |
8788715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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