View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk478-3 (Length: 277)
Name: R108-tnk478-3
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk478-3 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 17348216 - 17347943
Alignment:
| Q |
4 |
ttggttaaggaaattgatttccctgcagagagaaaatttgagcctaggttggtagaatcatcacctatgaaaagcctattgaaaatggtaacattgttat |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17348216 |
ttggttaaggaaattgatttctctgcagagagaaaatttgagcctaggttggtagaatcatcacctatgaaaagcctattgaaaatggtagcattgttat |
17348117 |
T |
|
| Q |
104 |
ttgatccacagttgagaaggtagttatctgtaggagtgaaagaagataatgaaaagggaatgaaaatgagaagaatgaaatgtataatcagattatgagt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17348116 |
ttgatccacagttgagaaggtagttatctgtaggagtgaaagaagatgatgaaaatggaatgaaaatgagaaaaatgaaatgtataatcagattatgagt |
17348017 |
T |
|
| Q |
204 |
gtccatggaagaagaaaaaagctatggtttttgaaactcacatcaagaataagtataaactagaaactgaagtg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17348016 |
gtccatggaagaagaaaaaagctatggtttttgaaactcacatcaagaataagtagaaactagaaactgaagtg |
17347943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13051 times since January 2019
Visitors: 8270