View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R108-tnk478-6 (Length: 533)
Name: R108-tnk478-6
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R108-tnk478-6 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
| [»] scaffold0502 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 47301312 - 47300781
Alignment:
| Q |
1 |
gcaaacaatgtatagcaacaccctcaaacgaaacgaaccacttatataaaacttctgtcttttttccccttccttctgatatcatgacttcatcaccatt |
100 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301312 |
gcaatcaatgtatagcaacacacttaaacgaaacgaaccacttatataaaacttctgtcttttttccccttccttctgatatcatgacttcatcaccatt |
47301213 |
T |
|
| Q |
101 |
gttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacatagatgatcaagaaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301212 |
gttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacatagatgatcaagaaggt |
47301113 |
T |
|
| Q |
201 |
ttgcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttcttagacatgcactctcacaagcac |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47301112 |
ttgcgcttcaatattcctatgatctttatctatcatcacgaaccatcaatggcagagaaagaccctgttaaggttctgagacatgcactctcacaagcac |
47301013 |
T |
|
| Q |
301 |
ttgtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtactggcgagggtgtcatgttcattgaagctga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301012 |
ttgtttattactatccatttgcgggaaggattagggagggagctagtcgcaagttgatggtggattgtactggcgagggtgtcatgttcattgaagctga |
47300913 |
T |
|
| Q |
401 |
agctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgttccaggctcagaacaaattatg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
47300912 |
agctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccatcaactcctatatgatgttcgaggctcggaacaaattatg |
47300813 |
T |
|
| Q |
501 |
gaccgtcccattcgactcatacaggttcaatt |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47300812 |
gaccgtcccattcgactcatacaggttcaatt |
47300781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 47296720 - 47296189
Alignment:
| Q |
1 |
gcaaacaatgtatagcaacaccctcaaacgaaacgaaccacttatataaaacttctgtcttttttccccttccttctgatatcatgacttcatcaccatt |
100 |
Q |
| |
|
|||| ||||| |||||||||| | ||||||||||||| || || |||||||||||||||||||||| |||||||| ||||||||||||||||||| | || |
|
|
| T |
47296720 |
gcaatcaatgcatagcaacacacccaaacgaaacgaaacagttgtataaaacttctgtcttttttctccttccttttgatatcatgacttcatcatcgtt |
47296621 |
T |
|
| Q |
101 |
gttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacatagatgatcaagaaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47296620 |
aatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgtgaagttaaactattatctgacatagatgatcaagaaggt |
47296521 |
T |
|
| Q |
201 |
ttgcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttcttagacatgcactctcacaagcac |
300 |
Q |
| |
|
|||| ||||||| |||| | || |||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| | ||| |
|
|
| T |
47296520 |
atgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtgcttagacatgcactctcacgaacac |
47296421 |
T |
|
| Q |
301 |
ttgtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtactggcgagggtgtcatgttcattgaagctga |
400 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
47296420 |
ttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtgaaggtgtcatgttcattgaagctga |
47296321 |
T |
|
| Q |
401 |
agctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgttccaggctcagaacaaattatg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47296320 |
agctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccaacaactcctatatgatgttccaggctcaacacaaattatc |
47296221 |
T |
|
| Q |
501 |
gaccgtcccattcgactcatacaggttcaatt |
532 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |
|
|
| T |
47296220 |
gaccgtcccattcggcaaatacaggttcaatt |
47296189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 79 - 532
Target Start/End: Original strand, 47275115 - 47275568
Alignment:
| Q |
79 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
47275115 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatc |
47275214 |
T |
|
| Q |
179 |
tgacatagatgatcaagaaggtttgcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttctt |
278 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| ||||| || |||||||||| ||| |||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
47275215 |
tgacatagatgatcaagaatgcttgcgtttcaatatgcctatcatatttatctatcgtcatgaaccatcaatgatagagaaagaccctgctaaggttctt |
47275314 |
T |
|
| Q |
279 |
agacatgcactctcacaagcacttgtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtactggcgagg |
378 |
Q |
| |
|
| || ||||||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||| || |||||||||||||||||| || |||| |
|
|
| T |
47275315 |
aaacgtgcactctcacaaacacttgtttattattatccacttgcgggaagaattagggagggagctagggacaagttgatggtggattgtaccggtgagg |
47275414 |
T |
|
| Q |
379 |
gtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgt |
478 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
47275415 |
gagtcatgttcattgaagctgaaactgatgttacacttgatgaatttggtgatgcactgcatcccccattcccttgcttccaagaactcatatacgatgt |
47275514 |
T |
|
| Q |
479 |
tccaggctcagaacaaattatggaccgtcccattcgactcatacaggttcaatt |
532 |
Q |
| |
|
||||||| || | |||||||| || | |||||||| || |||||||| ||||| |
|
|
| T |
47275515 |
tccaggcacaaaccaaattattgatcatcccattctgcttatacaggtccaatt |
47275568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 79 - 526
Target Start/End: Original strand, 47264547 - 47264994
Alignment:
| Q |
79 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatc |
178 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |
|
|
| T |
47264547 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
47264646 |
T |
|
| Q |
179 |
tgacatagatgatcaagaaggtttgcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttctt |
278 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||||||||||||| |||||||||| ||| ||||| |||||| ||| ||||| |||||||| |||||| |
|
|
| T |
47264647 |
tgacatagatgaccaagaaggcttacgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatgaaagaaaaagatcctgttaaagttctt |
47264746 |
T |
|
| Q |
279 |
agacatgcactctcacaagcacttgtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtactggcgagg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||| |||||||||||||||| |
|
|
| T |
47264747 |
agacatgcactctcacaagcacttgtttattactatccatttgcaggaaggattagggagggtgctggacgcaagttgatggtcgattgtactggcgagg |
47264846 |
T |
|
| Q |
379 |
gtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgt |
478 |
Q |
| |
|
| || |||||| |||||||||||||||||||||| |||||| |||| ||||| ||| ||||||| ||| |||| |||||| | |||| ||||| ||||| |
|
|
| T |
47264847 |
gagttatgttcgttgaagctgaagctgatgtaacccttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaacttctatacgatgt |
47264946 |
T |
|
| Q |
479 |
tccaggctcagaacaaattatggaccgtcccattcgactcatacaggt |
526 |
Q |
| |
|
|||||| || |||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
47264947 |
tccaggatcggaactaattattgaccgtcccattcgactcatacaggt |
47264994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 88 - 531
Target Start/End: Original strand, 47281862 - 47282308
Alignment:
| Q |
88 |
cttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacataga |
187 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
47281862 |
cttcatcaccattattgttgacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacataga |
47281961 |
T |
|
| Q |
188 |
tgatcaagaaggtttgcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttcttagacatgca |
287 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| || |||||||||| |||||||||||||||| | |||||||||||||||||||||||| | |||| |
|
|
| T |
47281962 |
tgatcaagaatgtttgcgtttcaatatgcctatcatatttatctatcgtcacgaaccatcaatggtaaagaaagaccctgttaaggttcttaaatgtgca |
47282061 |
T |
|
| Q |
288 |
ctctcacaagcacttgtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtac---tggcgagggtgtca |
384 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||| || ||||||||||||||||| ||| || ||||||| |
|
|
| T |
47282062 |
ctctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaaggtgtca |
47282161 |
T |
|
| Q |
385 |
tgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgttccagg |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
47282162 |
tgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgcttccaagaactcatatatgatgttccaag |
47282261 |
T |
|
| Q |
485 |
ctcagaacaaattatggaccgtcccattcgactcatacaggttcaat |
531 |
Q |
| |
|
| | ||||||| || || | ||| |||| ||||||||||| |||| |
|
|
| T |
47282262 |
cacgaaacaaatcattgatcatcctattctgctcatacaggtccaat |
47282308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 88 - 526
Target Start/End: Original strand, 47255512 - 47255950
Alignment:
| Q |
88 |
cttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacataga |
187 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||| | |||||||| || |
|
|
| T |
47255512 |
cttcatcaccattattgttcacagtgcggaggtcccaaccagagttggtacttccagctgcacccactcctcatgaagttaaactcctctctgacattga |
47255611 |
T |
|
| Q |
188 |
tgatcaagaaggtttgcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttcttagacatgca |
287 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| | || ||| ||| || ||| ||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
47255612 |
tgatcaagaaggccttcgtttcaatcttcctgtcatatttgtctttcgtcatgaaccttcaatgaaagagaaagaccctgttaaggttcttaaacatgca |
47255711 |
T |
|
| Q |
288 |
ctctcacaagcacttgtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtactggcgagggtgtcatgt |
387 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||| ||||||||||||||||| ||| |||||| ||||||||||||||| || || ||||||||||||| |
|
|
| T |
47255712 |
ctctcacgaacacttgtttattactatccaggtgcaggaaggattagggagggtgctgggcgcaagttgatggtggattgcaccggggagggtgtcatgt |
47255811 |
T |
|
| Q |
388 |
tcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgttccaggctc |
487 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| || | |||| ||||||||||||||| |
|
|
| T |
47255812 |
tcattgaagctgaagctgatataacacttgatcaatttggtgatgctctgcaacctccatttccttgcttccaagaaattctatgtgatgttccaggctc |
47255911 |
T |
|
| Q |
488 |
agaacaaattatggaccgtcccattcgactcatacaggt |
526 |
Q |
| |
|
|||| | ||||| ||||||||||| ||||| |||||||| |
|
|
| T |
47255912 |
agaatatattattgaccgtcccatccgacttatacaggt |
47255950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 345 - 532
Target Start/End: Original strand, 47240817 - 47241004
Alignment:
| Q |
345 |
aggcgcaggttgatggtggattgtactggcgagggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctc |
444 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47240817 |
aggcgcaagttgatggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctc |
47240916 |
T |
|
| Q |
445 |
cattcccttgcttccatcaactcctatatgatgttccaggctcagaacaaattatggaccgtcccattcgactcatacaggttcaatt |
532 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |
|
|
| T |
47240917 |
cattcccttgcttccaacaactcttatacgatgttccaggctcagaacatattattgaccgtaccatttgactcatacaggtccaatt |
47241004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 47240604 - 47240814
Alignment:
| Q |
1 |
gcaaacaatgtatagcaacaccctcaaacgaaacgaaccacttatataaaacttctgtcttttttccccttccttctgatatcatgacttcatcaccatt |
100 |
Q |
| |
|
|||| |||| |||| |||||| ||||||||||||||| | ||||||||||||| | ||||||| ||||||||| | ||||||||||||||||| | || |
|
|
| T |
47240604 |
gcaatcaatatataacaacacactcaaacgaaacgaaaccgttatataaaacttgtc-ctttttttcccttccttttaatatcatgacttcatcatcgtt |
47240702 |
T |
|
| Q |
101 |
gttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacatagatgatcaagaaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47240703 |
aatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacatagatgatcaagaaggt |
47240802 |
T |
|
| Q |
201 |
ttgcgtttcaat |
212 |
Q |
| |
|
||||| |||||| |
|
|
| T |
47240803 |
ttgcgattcaat |
47240814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 32729139 - 32729669
Alignment:
| Q |
1 |
gcaaacaatgtatagcaacaccctcaaacgaaacgaaccacttatataaaacttctgtcttttttccccttccttctgatatcatgacttcatcaccatt |
100 |
Q |
| |
|
|||| |||| |||| |||||| |||||| |||||||| |||||| |||||| | ||||||| || |||||| | |||||||||||||||||||||| |
|
|
| T |
32729139 |
gcaatcaatatataacaacacactcaaaggaaacgaaatcgttatattaaacttgtc-ctttttttcctttccttttaatatcatgacttcatcaccatt |
32729237 |
T |
|
| Q |
101 |
gttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacatagatgatcaagaaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32729238 |
gttgttcacagtgcggaggtgccaaccagagttggtgccaccagttgcacccactcctcgcgaagttaaactattatctgatatagatgatcaagaaggt |
32729337 |
T |
|
| Q |
201 |
ttgcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttcttagacatgcactctcacaagcac |
300 |
Q |
| |
|
|||||||||||| ||||| | || |||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
32729338 |
ttgcgtttcaatgttcctgtcatatttatctatcgtcgcgaaccatcaatggcagagaaagaccctattaaggttcttagacatgcactctcacgaacac |
32729437 |
T |
|
| Q |
301 |
ttgtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtactggcgagggtgtcatgttcattgaagctga |
400 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
32729438 |
ttgtgtattactacccatttgcgggaaggattagggagggtgctaggcgcaagttgatggtggattgtactggtgagggtgtcgtgttcattgaagctga |
32729537 |
T |
|
| Q |
401 |
agctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgttccaggctcagaacaaattatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
32729538 |
agctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccaacaactcttatacgatgttccaggctcagaacatattatt |
32729637 |
T |
|
| Q |
501 |
gaccgtcccattcgactcatacaggttcaatt |
532 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
32729638 |
gaccgtcccattcgactcatacaggtccaatt |
32729669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 15548783 - 15548732
Alignment:
| Q |
375 |
gagggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttgg |
427 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||| ||||||||||||| |||||||| |
|
|
| T |
15548783 |
gagggtgtgatgttcattgaggctgatgct-atgtaacacttgaacaatttgg |
15548732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 103 - 526
Target Start/End: Original strand, 20511577 - 20512000
Alignment:
| Q |
103 |
tgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatctgacatagatgatcaagaaggttt |
202 |
Q |
| |
|
||||||| ||||| |||||||||||| || |||| || |||||||||||||||||| ||||| ||||| || |||||||||||||||||||| || || | |
|
|
| T |
20511577 |
tgttcactgtgcgaaggtgccaaccacagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaagtct |
20511676 |
T |
|
| Q |
203 |
gcgtttcaatattcctatgatctttatctatcatcacgaaccatcaatgtcagagaaagaccctgttaaggttcttagacatgcactctcacaagcactt |
302 |
Q |
| |
|
|||| |||||||| | | ||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20511677 |
ccgttgcaatattcttctcatctttatctatcatcatgaaccattaatgacaaagaaagaccctgttaaggttcttagacatgcactctcacaagtactt |
20511776 |
T |
|
| Q |
303 |
gtttattactatccatttgcgggaaggattagggagggagctaggcgcaggttgatggtggattgtactggcgagggtgtcatgttcattgaagctgaag |
402 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||| | | | | ||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20511777 |
gtgcattactatccatttgcgggaaggattagggaaggagttggacaaaagttaatggtggattgtactggtgagggtgtcatgttcattgaagctgaag |
20511876 |
T |
|
| Q |
403 |
ctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccatcaactcctatatgatgttccaggctcagaacaaattatgga |
502 |
Q |
| |
|
|| |||||||||||||| | |||||||| | | ||||||| |||||||| ||| || || |||| ||||| |||||||||| || | || || ||| || |
|
|
| T |
20511877 |
ctaatgtaacacttgatgactttggtgacggtttgcatcccccattcccatgcgtcgatgaacttctatacgatgttccagattcggtactaaatattga |
20511976 |
T |
|
| Q |
503 |
ccgtcccattcgactcatacaggt |
526 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
20511977 |
tcgtcccattcgacttatacaggt |
20512000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 457
Target Start/End: Complemental strand, 91806 - 91706
Alignment:
| Q |
357 |
atggtggattgtactggcgagggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgct |
456 |
Q |
| |
|
||||| ||||||||||| || ||||| |||| ||||||||||| |||||||| || ||| | |||||||||||||| || ||||||||||| || |||| |
|
|
| T |
91806 |
atggttgattgtactggagaaggtgttttgtttattgaagctgatgctgatgttactcttaaacaatttggtgatgcacttcatcctccatttccatgct |
91707 |
T |
|
| Q |
457 |
t |
457 |
Q |
| |
|
| |
|
|
| T |
91706 |
t |
91706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 357 - 427
Target Start/End: Original strand, 36307164 - 36307234
Alignment:
| Q |
357 |
atggtggattgtactggcgagggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttgg |
427 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||||||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
36307164 |
atggtggattgtaatggagaaggtgttatgttcattgaggcagatgctgatgtaacacttgaacaatttgg |
36307234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 457
Target Start/End: Complemental strand, 14880136 - 14880036
Alignment:
| Q |
357 |
atggtggattgtactggcgagggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgct |
456 |
Q |
| |
|
||||||||||| ||||| || ||||| |||| ||||||||||| || ||||| || ||| | | |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14880136 |
atggtggattgcactggagaaggtgttttgtttattgaagctgatgcagatgttactcttaaagagtttggtgatgctcttcatcctccatttccttgct |
14880037 |
T |
|
| Q |
457 |
t |
457 |
Q |
| |
|
| |
|
|
| T |
14880036 |
t |
14880036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 14789665 - 14789595
Alignment:
| Q |
385 |
tgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgc |
455 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||| ||||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
14789665 |
tgtttattgaagctgatgctgatgttactcttgaacaatttggtgaagatcttcatcctccatttccttgc |
14789595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0502 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0502
Description:
Target: scaffold0502; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 11568 - 11532
Alignment:
| Q |
382 |
tcatgttcattgaagctgaagctgatgtaacacttga |
418 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |
|
|
| T |
11568 |
tcatgttcattgaagctgatgcagatgtaacacttga |
11532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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